View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_10 (Length: 347)
Name: NF11715_low_10
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 27287923 - 27287610
Alignment:
| Q |
18 |
gttccctggtttcagagcgcgttacctttcttctcagttgtttgagtcttataaacatgaggccgacatttcattacagggaactgctactagtcttcct |
117 |
Q |
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| T |
27287923 |
gttccctggtttcagagcgcgttacctttcttctcagatgtttgagtcttataaacacgaggccgacatttcattacagggaactgctactagtcttcct |
27287824 |
T |
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| Q |
118 |
ctaggttaagggactttggattcactctgagtccgagatcgaagagnnnnnnnnnaaggcatctaaagatttgtgttgatgacttattttgactaaaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
27287823 |
ctaggttaagggactttggattcactctgagtccgagatctaagagtttttttttaaggcat-agaagatttgtgttgatgacttattttggctaaaatc |
27287725 |
T |
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| Q |
218 |
cagttttaatgctaatttgaggagaaattcttgcatgagttatatgcagcaacaatgtaacaatgtacggacttttctattcagatattgacatataagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27287724 |
cagttttaatgctaatttgaggagaaattcttgcatgagttatatgcagc--------aacaatgtacggacttttctattcagatattgacaaataagg |
27287633 |
T |
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| Q |
318 |
cattttgaaattcatgagttcat |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
27287632 |
cattttgaaattcatgagttcat |
27287610 |
T |
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