View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_11 (Length: 335)
Name: NF11715_low_11
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 34687806 - 34688097
Alignment:
| Q |
16 |
tatccacatacagataccatatgagattaaaatttaaaaacatgtaaaatnnnnnnnnnnnnnngcaggttccaggaagcactagatagtagatactgca |
115 |
Q |
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| T |
34687806 |
tatccacatacagataccatatgagattaaagttttaaaacatgtaaaa-----------aaaagcaggttccaggaagcactagatagtagatactgca |
34687894 |
T |
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| Q |
116 |
tataacacgatgaagcttgaaatcgaaggttaatcatagaaagccaagtccatccacagaaacagatatcaggatgaatatgacatacatgcttccttaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687895 |
tataacacgatgaagcttgaaatcgaaggttaatcatagaaagtcaagtccatccacagaaacagatatcaggatgaatatgacatacatgcttccttaa |
34687994 |
T |
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| Q |
216 |
tcatcacatatgtgatatatgcaatattaattaaatcaaacgatattcttttgtaaaccagataagtcattccgtaggaaaaattaaataagagagtaaa |
315 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34687995 |
tcatcacatatgtgatatatgcaacattaattacatcaaacgatattcttttgtaaaccagataagtcattccgtaggaaaaattaaataagagagcaaa |
34688094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 34710218 - 34710509
Alignment:
| Q |
16 |
tatccacatacagataccatatgagattaaaatttaaaaacatgtaaaatnnnnnnnnnnnnnngcaggttccaggaagcactagatagtagatactgca |
115 |
Q |
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| T |
34710218 |
tatccacatacagataccatatgagattaaagttttaaaacatgtaaaa-----------aaaagcaggttccaggaagcactagatagtagatactgca |
34710306 |
T |
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| Q |
116 |
tataacacgatgaagcttgaaatcgaaggttaatcatagaaagccaagtccatccacagaaacagatatcaggatgaatatgacatacatgcttccttaa |
215 |
Q |
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| T |
34710307 |
tataacacgatgaagcttgaaatcgaaggttaatcatagaaagtcaagtccatccacagaaacagatatcaggatgaatatgacatacatgcttccttaa |
34710406 |
T |
|
| Q |
216 |
tcatcacatatgtgatatatgcaatattaattaaatcaaacgatattcttttgtaaaccagataagtcattccgtaggaaaaattaaataagagagtaaa |
315 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34710407 |
tcatcacatatgtgatatatgcaacattaattacatcaaacgatattcttttgtaaaccagataagtcattccgtaggaaaaattaaataagagagcaaa |
34710506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 28913592 - 28913632
Alignment:
| Q |
105 |
tagatactgcatataacacgatgaagcttgaaatcgaaggt |
145 |
Q |
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| T |
28913592 |
tagatactgcatgtaacacgatgaagcttgaaatctaaggt |
28913632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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