View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_16 (Length: 259)
Name: NF11715_low_16
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_16 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 1191872 - 1192125
Alignment:
| Q |
11 |
agcacagacacacaaacatttacacgttgacaccgatct-----tgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggt |
105 |
Q |
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| T |
1191872 |
agcacagacacacaaacatttacacgttgacaccgatctaatcttgagaaaattacataaacaaatataatcacttatgtcggtgtcacatcgtgtcggt |
1191971 |
T |
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| Q |
106 |
gtcgaacattgacatgtgttgtacaccagaacacaccatggatcataagtgccggttctatatcaagctattacacttctctctatttctttcggtataa |
205 |
Q |
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| T |
1191972 |
gtcggacattaacatgtgttgtacaccagaacacaccgtggatcataagtgccggttctatatcaagctattacacttctctctatttctttcagtataa |
1192071 |
T |
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| Q |
206 |
aatttcagctcgatctcattgttgtgtacctatgatatcaatcagcaagcaaca |
259 |
Q |
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| T |
1192072 |
aatttcagctcgatctcattgttgtgtacctatgatatcaattagcaagcaaca |
1192125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 1178530 - 1178710
Alignment:
| Q |
11 |
agcacagacacacaaacatttacacgttgacaccgat-----cttgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggt |
105 |
Q |
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| T |
1178530 |
agcacaaacatacaaacacttacacgttgacactgatacaatcttgagaaaattacataaacaaatataagtacatgtgtcaatgccgtatagtgtcagg |
1178629 |
T |
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| Q |
106 |
gtcgaacattgacatgtgttgtacaccagaacacaccatggatcataagtgccggttctatatcaagctattacacttctct |
187 |
Q |
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| T |
1178630 |
accagacattgacatgtgtcgtacaccggaacacaccat-gatcataaggggcggttttataacaagctattacgcttctct |
1178710 |
T |
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