View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11715_low_19 (Length: 209)

Name: NF11715_low_19
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11715_low_19
NF11715_low_19
[»] chr6 (3 HSPs)
chr6 (58-195)||(21184600-21184737)
chr6 (54-98)||(24269898-24269941)
chr6 (47-98)||(12333564-12333614)
[»] chr2 (5 HSPs)
chr2 (41-95)||(21870885-21870939)
chr2 (58-99)||(41057520-41057561)
chr2 (41-95)||(19976171-19976225)
chr2 (63-101)||(43860010-43860048)
chr2 (58-98)||(19189851-19189890)
[»] chr1 (8 HSPs)
chr1 (42-93)||(20006090-20006141)
chr1 (41-94)||(7158792-7158844)
chr1 (58-95)||(24162768-24162805)
chr1 (41-94)||(33491103-33491156)
chr1 (66-98)||(52494071-52494103)
chr1 (62-95)||(29450992-29451025)
chr1 (66-94)||(925441-925469)
chr1 (47-95)||(2613740-2613787)
[»] chr7 (7 HSPs)
chr7 (49-95)||(20243273-20243319)
chr7 (41-95)||(30397087-30397140)
chr7 (41-95)||(8290459-8290513)
chr7 (41-94)||(24102171-24102224)
chr7 (50-95)||(27263359-27263403)
chr7 (66-95)||(38728226-38728255)
chr7 (47-95)||(7908611-7908658)
[»] chr5 (6 HSPs)
chr5 (42-95)||(11637563-11637615)
chr5 (66-98)||(24636662-24636694)
chr5 (47-95)||(31561340-31561387)
chr5 (62-95)||(1488382-1488415)
chr5 (41-98)||(5150072-5150129)
chr5 (65-98)||(6025323-6025356)
[»] chr4 (6 HSPs)
chr4 (49-101)||(25101388-25101439)
chr4 (47-94)||(43374268-43374314)
chr4 (50-95)||(21991246-21991290)
chr4 (42-79)||(34033366-34033403)
chr4 (41-101)||(16470316-16470375)
chr4 (58-94)||(16584956-16584991)
[»] chr8 (3 HSPs)
chr8 (47-98)||(11052991-11053041)
chr8 (47-94)||(34645081-34645128)
chr8 (47-95)||(32192912-32192959)
[»] chr3 (2 HSPs)
chr3 (52-95)||(47313372-47313415)
chr3 (62-95)||(30046300-30046333)
[»] scaffold0021 (1 HSPs)
scaffold0021 (41-95)||(161159-161212)
[»] scaffold0016 (1 HSPs)
scaffold0016 (114-180)||(66486-66551)
[»] scaffold0458 (1 HSPs)
scaffold0458 (66-95)||(11166-11195)
[»] scaffold0015 (1 HSPs)
scaffold0015 (47-95)||(75201-75249)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 58 - 195
Target Start/End: Complemental strand, 21184737 - 21184600
Alignment:
Q  58 aactccgaaccttgcatatttttatgcattgtccatactaattgtatacctaaactattttctaaaacaattgtataccttaacctttaatttattaaaa 157  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21184737 aactccgaaccttacatatttttatgcattgtccatatcaattgtatacctaaactattttctaaaacaattgtataccttaacctttaatttattaaaa 21184638  T
Q  158 taaatatttaaaattacattaaactacatcctttcatc 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21184637 taaatatttaaaattacattaaactacatcctttcatc 21184600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 24269941 - 24269898
Alignment:
Q  54 ttcaaactccgaaccttgcatatttttatgcattgtccatactaa 98  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||    
T  24269941 ttcaaaccccgaaccttgcatatttt-atgcattgtccatactaa 24269898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 12333564 - 12333614
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatactaa 98  Q
    ||||||||| |||||| | |||||||||||||| ||||||||||||||||||    
T  12333564 gtcggggtttaaactctggaccttgcatatttt-atgcattgtccatactaa 12333614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 21870885 - 21870939
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  21870885 gtggtggtcggggttcgaaccccgaaccttgcatattattatgcattgtccatac 21870939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 41057561 - 41057520
Alignment:
Q  58 aactccgaaccttgcatatttttatgcattgtccatactaat 99  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  41057561 aactccgaatcttgcatatttttatgcattgttcatactaat 41057520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 19976225 - 19976171
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||| |||| ||||| ||| ||| |||||||||||| |||||||||||||||||    
T  19976225 gtggtggtcgaggttcgaaccccggaccttgcatattattatgcattgtccatac 19976171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 43860010 - 43860048
Alignment:
Q  63 cgaaccttgcatatttttatgcattgtccatactaattg 101  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  43860010 cgaaccttgcatatttttatgcatcgtccataccaattg 43860048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 19189851 - 19189890
Alignment:
Q  58 aactccgaaccttgcatatttttatgcattgtccatactaa 98  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  19189851 aactccgaaccttgcata-ttttatacattgtccatactaa 19189890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 20006141 - 20006090
Alignment:
Q  42 tggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccat 93  Q
    |||| |||||||||||||| ||||||| |||||||| |||||||||||||||    
T  20006141 tggtggtcggggttcaaaccccgaaccctgcatattattatgcattgtccat 20006090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 7158844 - 7158792
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccata 94  Q
    ||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  7158844 gtggtggtcggggctcaaactccggaccttgcata-ttttatgcattgtccata 7158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 24162768 - 24162805
Alignment:
Q  58 aactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||||||||| |||||||||||||||||||||    
T  24162768 aactccgaaccttgcaaatttttatgcattgtccatac 24162805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 33491156 - 33491103
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccata 94  Q
    ||||| |||||| ||| ||| |||||||||||||||| ||||||||||||||||    
T  33491156 gtggtggtcgggattcgaaccccgaaccttgcatattattatgcattgtccata 33491103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 52494103 - 52494071
Alignment:
Q  66 accttgcatatttttatgcattgtccatactaa 98  Q
    |||||||||||||||||||||||||||||||||    
T  52494103 accttgcatatttttatgcattgtccatactaa 52494071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 29450992 - 29451025
Alignment:
Q  62 ccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||||||||| |||||||||||||||||    
T  29450992 ccgaaccttgcatattattatgcattgtccatac 29451025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 925441 - 925469
Alignment:
Q  66 accttgcatatttttatgcattgtccata 94  Q
    |||||||||||||||||||||||||||||    
T  925441 accttgcatatttttatgcattgtccata 925469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 2613787 - 2613740
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  2613787 gtcggggttcgaaccccgaaccttacatatttt-atgcattgtccatac 2613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 20243319 - 20243273
Alignment:
Q  49 cggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||||    
T  20243319 cggggttcaaaccccggaccttgcatattattatgcattgtccatac 20243273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 30397140 - 30397087
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||| |||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  30397140 gtggtggtcggggttcaaaccccgaaccttacata-ttttatgcattgtccatac 30397087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 8290459 - 8290513
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||| |||||| ||| ||| ||| |||||||||||| |||||||||||||||||    
T  8290459 gtggtggtcgggattcgaaccccggaccttgcatattattatgcattgtccatac 8290513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 24102171 - 24102224
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccata 94  Q
    ||||| |||||| ||  |||||||||||||| |||||||||| |||||||||||    
T  24102171 gtggtggtcgggatttgaactccgaaccttgtatatttttatacattgtccata 24102224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 27263403 - 27263359
Alignment:
Q  50 ggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||||| |||||||||||||||||| | |||||||||||||||||    
T  27263403 ggggttcgaactccgaaccttgcata-tattatgcattgtccatac 27263359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 38728255 - 38728226
Alignment:
Q  66 accttgcatatttttatgcattgtccatac 95  Q
    ||||||||||||||||||||||||||||||    
T  38728255 accttgcatatttttatgcattgtccatac 38728226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 7908658 - 7908611
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  7908658 gtcggggttcgaaccccgaaccttacatatttt-atgcattgtccatac 7908611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 11637563 - 11637615
Alignment:
Q  42 tggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||| |||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  11637563 tggtggtcggggttcgaaccccgaaccttgcata-ttttatgcattgtccatac 11637615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 24636662 - 24636694
Alignment:
Q  66 accttgcatatttttatgcattgtccatactaa 98  Q
    |||||||||||||||||||||||||||||||||    
T  24636662 accttgcatatttttatgcattgtccatactaa 24636694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 31561340 - 31561387
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  31561340 gtcggggttcaaac-ccggaccttgcatattattatgcattgtccatac 31561387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 1488415 - 1488382
Alignment:
Q  62 ccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||| ||||||||||||||||||||||||||||    
T  1488415 ccgaatcttgcatatttttatgcattgtccatac 1488382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 5150072 - 5150129
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatactaa 98  Q
    ||||| |||||||||| ||| ||  ||||| |||||| ||||||||||||||||||||    
T  5150072 gtggttgtcggggttcgaaccccagaccttacatattattatgcattgtccatactaa 5150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 6025356 - 6025323
Alignment:
Q  65 aaccttgcatatttttatgcattgtccatactaa 98  Q
    |||||| |||||||||||||||||||||||||||    
T  6025356 aaccttacatatttttatgcattgtccatactaa 6025323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 25101388 - 25101439
Alignment:
Q  49 cggggttcaaactccgaaccttgcatatttttatgcattgtccatactaattg 101  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||| |||||    
T  25101388 cggggttcaaaccccgacccttgcata-ttttatgcattgtccataccaattg 25101439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 43374268 - 43374314
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccata 94  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||    
T  43374268 gtcggggtttgaactccgaaccttgcata-ttttatgcattgtccata 43374314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 21991246 - 21991290
Alignment:
Q  50 ggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||    
T  21991246 ggggttcgaactccggaccttgcata-ttttatgcattgtccatac 21991290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 34033403 - 34033366
Alignment:
Q  42 tggtagtcggggttcaaactccgaaccttgcatatttt 79  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  34033403 tggtggtcggggttcaaactccggaccttgcatatttt 34033366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 16470375 - 16470316
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatactaattg 101  Q
    ||||| |||||||||| ||| | | |||||||||||||| ||||||||||||||| |||||    
T  16470375 gtggtggtcggggttcgaaccctggaccttgcatatttt-atgcattgtccataccaattg 16470316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 16584956 - 16584991
Alignment:
Q  58 aactccgaaccttgcatatttttatgcattgtccata 94  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16584956 aactccgaaccttgcata-ttttatgcattgtccata 16584991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 11053041 - 11052991
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatactaa 98  Q
    |||||||||||||| ||| |||||||||| | ||||||||||||||||||||    
T  11053041 gtcggggttcaaaccccggaccttgcata-tattatgcattgtccatactaa 11052991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 34645081 - 34645128
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccata 94  Q
    |||||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  34645081 gtcggggttcgaaccccggaccttgcatattattatgcattgtccata 34645128  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 32192959 - 32192912
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||| ||| |||||||||||||| | |||||||||||||||||    
T  32192959 gtcggggttcgaaccccgaaccttgcata-tattatgcattgtccatac 32192912  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 47313372 - 47313415
Alignment:
Q  52 ggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||||||  |||||||||||||||| |||||||||||||||||    
T  47313372 ggttcaaatcccgaaccttgcatattattatgcattgtccatac 47313415  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 30046300 - 30046333
Alignment:
Q  62 ccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||| |||||||||||||||||||||||||||    
T  30046300 ccgaactttgcatatttttatgcattgtccatac 30046333  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 161212 - 161159
Alignment:
Q  41 gtggtagtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    ||||| |||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  161212 gtggtggtcggggtttgaaccccgaaccttgcata-ttttatgcattgtccatac 161159  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 66486 - 66551
Alignment:
Q  114 attttctaaaacaattgtataccttaacctttaatttattaaaataaatatttaaaattacattaaa 180  Q
    |||||||||||||| || ||||||||| |||||| |||||  | |||||||||||| ||||||||||    
T  66486 attttctaaaacaaatgaataccttaa-ctttaaattattggattaaatatttaaatttacattaaa 66551  T

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Target: scaffold0458 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 11166 - 11195
Alignment:
Q  66 accttgcatatttttatgcattgtccatac 95  Q
    ||||||||||||||||||||||||||||||    
T  11166 accttgcatatttttatgcattgtccatac 11195  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 75249 - 75201
Alignment:
Q  47 gtcggggttcaaactccgaaccttgcatatttttatgcattgtccatac 95  Q
    |||||||||| ||||| | |||||||||||| ||||||||| |||||||    
T  75249 gtcggggttcgaactctggaccttgcatattattatgcattatccatac 75201  T

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