View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11715_low_2 (Length: 540)

Name: NF11715_low_2
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11715_low_2
NF11715_low_2
[»] chr8 (8 HSPs)
chr8 (18-528)||(1360427-1360937)
chr8 (83-515)||(1349782-1350214)
chr8 (300-521)||(11366591-11366812)
chr8 (117-412)||(1343439-1343734)
chr8 (117-412)||(1355853-1356148)
chr8 (194-288)||(11366926-11367020)
chr8 (430-466)||(1353243-1353279)
chr8 (312-352)||(1353313-1353353)
[»] chr7 (2 HSPs)
chr7 (138-500)||(13589845-13590207)
chr7 (300-462)||(29389250-29389412)
[»] chr3 (2 HSPs)
chr3 (264-412)||(24617858-24618006)
chr3 (174-224)||(24618046-24618096)
[»] chr2 (2 HSPs)
chr2 (327-521)||(43369274-43369468)
chr2 (293-519)||(43365092-43365315)


Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 1360937 - 1360427
Alignment:
Q  18 tttcaaactctttacgtttatttttcattaagcgtttcaaacgcctacttgggttgcatgttgtctttataatcaacttcaacatctcttcttttgtatg 117  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |    
T  1360937 tttcaaactctttacgcttatttttcattaaacgtttcaaacgcctacttgggttgcatgttgtgtttataatcaacttcaacatctcttcttttgcacg 1360838  T
Q  118 atcatcaagccaatgaaatatgtcgcaaatctcctttggtgattttatttccactgttcgagctatttcatgacatgtgagatcaatcaatggctttaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1360837 atcatcaagccaatgaaatatgtcgcaaatctcctttggtgattttatttccactgttcgagctatttcatgacatgtgagatcaatcaatggcttcaac 1360738  T
Q  218 tgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttccttgtttgagtggcctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360737 tgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttccttgtttgagtggcctt 1360638  T
Q  318 gtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttggaagatcctgtccc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1360637 gtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagacatattgcagaactcttggaagatcctgtccc 1360538  T
Q  418 tttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagttttaagccatacataaggc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360537 tttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagttttaagccatacataaggc 1360438  T
Q  518 ttcaccgtctc 528  Q
    |||||| ||||    
T  1360437 ttcaccatctc 1360427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 83 - 515
Target Start/End: Complemental strand, 1350214 - 1349782
Alignment:
Q  83 tttataatcaacttcaacatctcttcttttgtatgatcatcaagccaatgaaatatgtcgcaaatctcctttggtgattttatttccactgttcgagcta 182  Q
    ||||||||  ||| ||| |||||||| | |||| |||||| | |||||  ||| |||||||  |||||||| |||||||||  ||| | |  ||| ||||    
T  1350214 tttataattgactccaatatctcttcctctgtaagatcatgaggccaaataaacatgtcgcgtatctccttgggtgattttccttcaattaatcgtgcta 1350115  T
Q  183 tttcatgacatgtgagatcaatcaatggctttaactgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctc 282  Q
     | ||||||||||||||||| | ||||||||||| |||||| | | ||||||| ||||||   |||||||  ||||||   ||||||||||||||| | |    
T  1350114 atgcatgacatgtgagatcatttaatggctttaattgaaggctttttgcagcaaatgccaatgcaaagagtatgtcagggtctatcctaacaaatttcgc 1350015  T
Q  283 atcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcagga 382  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||||| || | ||||||||| || ||||    
T  1350014 atcatacaattttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaatgaaggacttacttgttgagga 1349915  T
Q  383 agaaatattgcagaactcttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttgga 482  Q
    ||| |||||| |||||||||| ||||||| || ||||||| | ||||||||||  |||| |||||| ||| |||||||||||||  ||| |||  |||||    
T  1349914 agacatattggagaactcttgcaagatccagttcctttttgtaatatttcttgtaatatgaaaggggaaatcattgcaatctcttgatctacttgttgga 1349815  T
Q  483 ttgaatcgtcacaagttttaagccatacataag 515  Q
    ||||| | |||||||||| |||||| |||||||    
T  1349814 ttgaaccatcacaagtttgaagccacacataag 1349782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 521
Target Start/End: Complemental strand, 11366812 - 11366591
Alignment:
Q  300 ccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaact 399  Q
    ||||||||||| ||||| |||  ||||||||| |||| ||||||||||||||| ||| ||||||| |||| |||| || ||||||| ||| |||| || |    
T  11366812 ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt 11366713  T
Q  400 cttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagtt 499  Q
    |||||||| |||  | ||||||| | ||||||||||||||||||| || |||| ||| |||||||||   ||||||  ||||||||| || ||  |||||    
T  11366712 cttggaagttccattgcctttttgtaatatttcttgacatataaatggacaaaacatcgcaatctcttgttccacttgttggattgattcatcggaagtt 11366613  T
Q  500 ttaagccatacataaggcttca 521  Q
    | |||||| |||||||||||||    
T  11366612 tgaagccacacataaggcttca 11366591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 117 - 412
Target Start/End: Complemental strand, 1343734 - 1343439
Alignment:
Q  117 gatcatcaagccaatgaaatatgtcgcaaatctcctttggtgattttatttccactgttcgagctatttcatgacatgtgagatcaatcaatggctttaa 216  Q
    |||||||| || |||||||||||||||  |||||||  | |||||||  ||| | | ||| || |||| |||||||||||||||||  |||||| |||||    
T  1343734 gatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatttaa 1343635  T
Q  217 ctgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttccttgtttgagtggcct 316  Q
    ||||||||  | ||||||| | | || |||| | |   |    ||  |||||||||| |||| |||||||||  | |||| ||| ||||||||| | |||    
T  1343634 ctgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcct 1343535  T
Q  317 tgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttggaagatcct 412  Q
    |  | |||||||||| |||||||||||||||||||| | || |||||| || | |||| || ||||||| |||||| |||| ||||||||||||||    
T  1343534 ttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 1343439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 117 - 412
Target Start/End: Original strand, 1355853 - 1356148
Alignment:
Q  117 gatcatcaagccaatgaaatatgtcgcaaatctcctttggtgattttatttccactgttcgagctatttcatgacatgtgagatcaatcaatggctttaa 216  Q
    |||||||| || |||||||||||||||  |||||||  | |||||||  ||| | | ||| || |||| |||||||||||||||||  |||||| |||||    
T  1355853 gatcatcaggcaaatgaaatatgtcgcgtatctcctcagatgattttccttcaattattctagttattgcatgacatgtgagatcatacaatggatttaa 1355952  T
Q  217 ctgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttccttgtttgagtggcct 316  Q
    ||||||||  | ||||||| | | || |||| | |   |    ||  |||||||||| |||| |||||||||  | |||| ||| ||||||||| | |||    
T  1355953 ctgaaggtattttgcagcagacgtcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcct 1356052  T
Q  317 tgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttggaagatcct 412  Q
    |  | |||||||||| |||||||||||||||||||| | || |||||| || | |||| || ||||||| |||||| |||| ||||||||||||||    
T  1356053 ttcacgtgatgaaatcgacaataatcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 1356148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 11367020 - 11366926
Alignment:
Q  194 gtgagatcaatcaatggctttaactgaaggttgtatgcagcatatgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcata 288  Q
    |||||||||| ||||||||||||||||||| ||| ||||||| ||| || |||| |||| || || |   |||||||||| |||| |||||||||    
T  11367020 gtgagatcaaccaatggctttaactgaaggctgtctgcagcagatgtcaactcacagagcttctctgtgtctatcctaacgaatttctcatcata 11366926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 466
Target Start/End: Complemental strand, 1353279 - 1353243
Alignment:
Q  430 ttcttgacatataaaagggcaaaccattgcaatctct 466  Q
    |||||||||||||||||||||||  ||||||||||||    
T  1353279 ttcttgacatataaaagggcaaaatattgcaatctct 1353243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 1353353 - 1353313
Alignment:
Q  312 ggccttgtatgtgatgaaatagacaataatcaagaattaag 352  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  1353353 ggccttttacgtgatgaaatcgacaataatcaagaattaag 1353313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 138 - 500
Target Start/End: Complemental strand, 13590207 - 13589845
Alignment:
Q  138 tgtcgcaaatctcctttggtgattttatttccactgttcgagctatttcatgacatgtgagatcaatcaatggctttaactgaaggttgtatgcagcata 237  Q
    ||||||| |||||||  |||||  || |||||| ||||||||||||| || |||||||||| |||| ||||| | |||||| |||  | |  || ||| |    
T  13590207 tgtcgcatatctcctccggtgaacttctttccagtgttcgagctattgcacgacatgtgagctcaaccaatgaccttaacttaagactattcgcggcaga 13590108  T
Q  238 tgccagctcaaagaggttgtcagccactatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaa 337  Q
    ||||| |||| | ||  | ||||    |||| ||||||||| ||||||| ||| |||||||||||||| ||||  |||| |||   |||||||| |||||    
T  13590107 tgccaactcatatagtctttcagtgggtatcgtaacaaatttctcatcaaacagttttctttccttgtctgagcagcctcgtacccgatgaaattgacaa 13590008  T
Q  338 taatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttggaagatcctgtccctttttctgatatttcttgac 437  Q
    || ||||||||| ||||||||||||||  |||||| | || ||||||| |||||||||| |||| |||| ||||  |||||||||   ||||||||||||    
T  13590007 tattcaagaattgagttcaacattgcagaacttacctctttaggaagacatattgcagagctctcggaaaatcccatccctttttgcaatatttcttgac 13589908  T
Q  438 atataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagttt 500  Q
    |||| |||||||||| |||||||||||||   ||||||  |||||||||| | ||||||||||    
T  13589907 atatgaaagggcaaaacattgcaatctcttgttccacttgttggattgaaccatcacaagttt 13589845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 300 - 462
Target Start/End: Original strand, 29389250 - 29389412
Alignment:
Q  300 ccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaact 399  Q
    ||||||||||| ||||| |||  ||||||||  ||||||||||||||| |||| ||||||| ||| ||   ||||||||||||||| |||| ||| || |    
T  29389250 ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt 29389349  T
Q  400 cttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaat 462  Q
     ||||||||||| || ||||||| |  |||||||||||| |||| |||||||| |||||||||    
T  29389350 tttggaagatcccgtgcctttttgtattatttcttgacaaataagagggcaaaacattgcaat 29389412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 412
Target Start/End: Complemental strand, 24618006 - 24617858
Alignment:
Q  264 ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc 363  Q
    |||||| ||| ||||  ||||||||| | |||  ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| | ||||||||    
T  24618006 ctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgc 24617907  T
Q  364 aagacttactttttcaggaagaaatattgcagaactcttggaagatcct 412  Q
    | || | |||| || ||||||| |||||| |||| ||||||||||||||    
T  24617906 aggagtgacttgttgaggaagacatattggagaagtcttggaagatcct 24617858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 24618096 - 24618046
Alignment:
Q  174 ttcgagctatttcatgacatgtgagatcaatcaatggctttaactgaaggt 224  Q
    ||||||||||| |||||||||||||||||  |||||| | |||||||||||    
T  24618096 ttcgagctattgcatgacatgtgagatcatacaatggttctaactgaaggt 24618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 327 - 521
Target Start/End: Original strand, 43369274 - 43369468
Alignment:
Q  327 gaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattgcagaactcttggaagatcctgtccctttttctga 426  Q
    ||||| ||||||||| |||||||||| || |||||| |  ||| || | || ||||||| || ||||| || |||||||||||||||| |||||||   |    
T  43369274 gaaatcgacaataattaagaattaagctccacattgaagaactaacctgttgaggaagacatgttgcacaattcttggaagatcctgtgcctttttgcaa 43369373  T
Q  427 tatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtcacaagttttaagccatacataaggcttca 521  Q
    |||||||| || |||||| ||||||| ||||||||| |||   ||||||  ||| |||||| | ||| |||||| |||||| ||||||| |||||    
T  43369374 tatttctttacgtataaatgggcaaaacattgcaatatcttgttccacttgttgaattgaaccatcagaagtttgaagccacacataagacttca 43369468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 519
Target Start/End: Original strand, 43365092 - 43365315
Alignment:
Q  293 tttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgcaagacttactttttcaggaagaaatattg 392  Q
    |||| ||||||||||||| ||||| ||   ||||||||| ||||||||| |||||| ||| || |||||| |  ||| || | || ||||||| ||| ||    
T  43365092 tttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagctccacattggagaactgacctgttgaggaagacatactg 43365191  T
Q  393 cagaactcttggaagatcctgtccctttttctgatatttcttgacatataaaagggcaaaccattgcaatctctctatccactacttggattgaatcgtc 492  Q
    || || |||||||||||||  | |||||||     | ||||| ||||||||| ||||||| ||||||||| |||   ||||||  |||| ||||| | ||    
T  43365192 cacaattcttggaagatcccatgccttttt---gcaattcttcacatataaatgggcaaaacattgcaatatcttgctccacttgttgggttgaaccatc 43365288  T
Q  493 acaagttttaagccatacataaggctt 519  Q
    | |||||| |||||| |||||||||||    
T  43365289 agaagtttgaagccacacataaggctt 43365315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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