View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_3 (Length: 489)
Name: NF11715_low_3
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Original strand, 48536856 - 48537316
Alignment:
| Q |
16 |
acatcaaggaaccaatgtttccaatacaaaaacaagctcaattgaatttcagggaaagtacgatgctttcaaacactgtattggacaaatagacttagag |
115 |
Q |
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| T |
48536856 |
acatcaaggaaccaatgtttccaatacaaaaataagctcaattgaatttcagggaaagtacgatgctttcaaacactgtattggacaaatagacttagag |
48536955 |
T |
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| Q |
116 |
taacaaacttttaattgcaaataaataaatatgttgagggtatgaaaaggtgaaaagggaaagttcataccatcccgtttatgctccgtcgtagaacggt |
215 |
Q |
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| T |
48536956 |
taacaaacttttaattgcaaataaataaatatgttgagggtatgaaaaggtgaaaagggaaagttcataccatcccgtttatgctccgtcgtagaacggt |
48537055 |
T |
|
| Q |
216 |
aaagcaaagaagtaaagaagagtgtattagccataaaatcagacatgtgatcagccaacaaaggatactcaacaccagcaatcaacccttttctgagaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48537056 |
aaagcaaagaagtaaagaagagtgtattagccataaaatcagacatgtgatcagccaacaaaggatactcaacaccagcaatcaacccttttctgagaat |
48537155 |
T |
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| Q |
316 |
tatatgtggtggctccaaataacgcataccaatcaaggacatagtacgatcaaaatgatacacttcaggaacatgatcaggactcaatttaccctcttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48537156 |
tatatgtggtggctccaaataacgcataccaatcaaagacatagtacgatcaaaatgatacacttcaggaacatgatcaggactcaatttaccctcttct |
48537255 |
T |
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| Q |
416 |
ttcaatgccaatgactcaaaataggctctttctttcgtcattggccatgattctcctatgc |
476 |
Q |
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| T |
48537256 |
ttcaatgccaatgactcaaaataggctctttctttcgtcattggccatgattctcctatgc |
48537316 |
T |
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