View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_4 (Length: 477)
Name: NF11715_low_4
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 50243884 - 50244335
Alignment:
| Q |
19 |
tatatcagcatcataatactgagacttggaagcttgaatcatgtcaagcctaagagtatctctttgaggaacttcatcgtcacgtgacactttccattct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243884 |
tatatcagcatcataatactgagacttggaagcttgaatcatgtcaagcctaagagtatctctttgaggaacttcatcgtcacgtgacactttccattct |
50243983 |
T |
|
| Q |
119 |
tgtacaagaaacggggatttcacaaagtctatggagcatccataatcctaattaacatcacaacatgtcaaaaacacaatatcaaac-------cttaag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50243984 |
tgtacaagaaacggggatttcacaaagtctatggagcatccataatcctaattaacatcacaacatgtcaaaaacacaatatcaaaccttaaaccttaag |
50244083 |
T |
|
| Q |
212 |
caagctaaagttctatcaaatttcttaagaaaaacagccaacacatccttactttgaatttgaaagaaaagaaaccttgaatcctgaattcacggcgtcc |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244084 |
caagctaaagttctatcaaatttctcaagaaaaacagccaacacatccttactttgaatttgaaagaaaagaaaccttgaatcctgaattcacggcgtcc |
50244183 |
T |
|
| Q |
312 |
ggaaacttcatagagtctgctcttatctttaagagaagctctcaaagcacacaccaaagattgccacatgttcctgttcaaagagtctcctacaaacacc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244184 |
ggaaacttcatagagtctgctcttatctttaagagaagctctcaaagcacacaccaaagattgccacatgttcctgttcaaagagtctcctacaaacacc |
50244283 |
T |
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| Q |
412 |
actctcttacctcttaacatgtgcaacattttcaacccatcaaacctatatg |
463 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50244284 |
actctcttacctctcaacatgtgcaacattttcaacccatcaaacctatatg |
50244335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 10654841 - 10654785
Alignment:
| Q |
19 |
tatatcagcatcataatactgagacttggaagcttgaatcatgtcaagcctaagagt |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10654841 |
tatatcagcatcataatactgagacttggaagcttgaatcatagcaagcctaagagt |
10654785 |
T |
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