View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_5 (Length: 451)
Name: NF11715_low_5
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 10015560 - 10015125
Alignment:
| Q |
17 |
agcacagagtgaaggtacaatattatgagcactaatgttgattgaaactccatagcaaaactttgcacaaagttcaaaagcctctgatccaccaggcata |
116 |
Q |
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| T |
10015560 |
agcacaaagtgaaggtacaatattatgagcactaatgttgattgaaactccatagcaaaactttgcacaaagttcaaaagcctctgatccaccaggcata |
10015461 |
T |
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| Q |
117 |
tcattaagctctagaggaacactcttagaatcattagtatcagaacaaagtctttgtagaaggccgcattttgaaacaagtggagactgcaagtaacaaa |
216 |
Q |
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| T |
10015460 |
tcattaagctctagaggaacactcttagaatcattagtatcagaacaaagtctttgtagaaggccgcattttgaaacaagtggagactgcaagtaacaaa |
10015361 |
T |
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| Q |
217 |
agtagaattatagatgaaccagattaaattttaactcaatttaattccaataccttgtgtataagataagttgtatcattggtttttatcacaagatcag |
316 |
Q |
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| T |
10015360 |
agtagaattatagatgaaccagattaaattttaactcaatttaattccaataccttgtgtataagataagttgtatcattggtttttatcacaagatcag |
10015261 |
T |
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| Q |
317 |
gagctatatctgaaactagactcctgcattcatgattatgataataaggattaaactcaaatcaagtttcctatacttatatcttgtca-aaaatctcaa |
415 |
Q |
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| T |
10015260 |
gaggtatatctgaaactagactcctgcattcatgattatgataataaggattaaactcaaatcaagtttcctatacttatatcttgtcaaaaaatctcaa |
10015161 |
T |
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| Q |
416 |
atcaaatcatgatgtggctgtttgatttgagaaatt |
451 |
Q |
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| T |
10015160 |
atcaaatcatgatgtggctgtttgatttgagaaatt |
10015125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 10021325 - 10021232
Alignment:
| Q |
17 |
agcacagagtgaaggtacaatattatgagcactaatgttgattgaaactccatagcaaaactttgcacaaag-ttcaaaagcctctgatccacc |
109 |
Q |
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| T |
10021325 |
agcacaaaatgaaggtacaaaattataagcactaatgttgattgaaactccatagcagaacttagcacaaagtttcaaaagcttctgctccacc |
10021232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 56185417 - 56185245
Alignment:
| Q |
17 |
agcacagagtgaaggtacaatattatgagcactaatgttgattgaaactccatagcaaaactttgcacaaagttcaaaagcctctgatccaccaggcata |
116 |
Q |
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|||||||| || || ||||| ||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| ||| || ||||| ||| |
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| T |
56185417 |
agcacagaatgcagatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtata |
56185318 |
T |
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| Q |
117 |
tcattaagctctagaggaacactcttagaatcattagtatcagaacaaagtctttgtagaaggccgcattttg |
189 |
Q |
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| T |
56185317 |
tcatgaagctccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttg |
56185245 |
T |
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