View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11715_low_6 (Length: 411)
Name: NF11715_low_6
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 31176780 - 31177167
Alignment:
| Q |
15 |
agtttgcttcacttgctattcctcctttctttgcaataaatttgaatgcatcttctaagtaaccaccactgcatccactgctattacctctcacacaatc |
114 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31176780 |
agtttgtttcacttgccattcctcctttctttgcaataaatttgaatgcatcttctaagtaaccaccactgcatccactgctattacctctcacacaatc |
31176879 |
T |
|
| Q |
115 |
tatcagttcttgttctgattgtgacactagttcacctgttgttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacctata |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31176880 |
tatcagttcttgttctgatagtgacactagttcacctgttgttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacctata |
31176979 |
T |
|
| Q |
215 |
tttttcacaagttcatataacaaccnnnnnnnnntgtgcaagtatgttagaaaacgataaatgtttattttcatagaagaaagtgataaatgttgtgacc |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31176980 |
tttttcacaagttcatataacaacc-aaaaaaattgtgcaagtatgttagaaaacgataaatgtttattttcatagaagaaagtgataaatgttgtgacc |
31177078 |
T |
|
| Q |
315 |
gtaaaatatgattagatgtatatgtnnnnnnnnnnnnnnnttgaaggatgtaaacttttgtatagcacctacttattagcttctatgct |
403 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
31177079 |
gtaaaatatgattagatgtatatgtaaaaaaaaaaaatatttgaaggatgtaaacttttgtatagtacctacttattagattctatgct |
31177167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 31185689 - 31185782
Alignment:
| Q |
108 |
cacaatctatcagttcttgttctgattgtgacactagttcacctgttgttatttggtggataccctctatggaagccacagttgaaaatgccca |
201 |
Q |
| |
|
||||||||| || ||||||||||| | || ||||||| ||||| |||||||||| ||||||||| | | |||||| |||||||||||||| |
|
|
| T |
31185689 |
cacaatctactagctcttgttctgagagggagactagtttgcctgtagttatttggttgataccctcggttgcagccaccgttgaaaatgccca |
31185782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 31194557 - 31194609
Alignment:
| Q |
149 |
cctgttgttatttggtggataccctctatggaagccacagttgaaaatgccca |
201 |
Q |
| |
|
||||| |||||||||| ||||||||| || | |||||| |||||||||||||| |
|
|
| T |
31194557 |
cctgtagttatttggttgataccctcgattgcagccactgttgaaaatgccca |
31194609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 35228578 - 35228643
Alignment:
| Q |
149 |
cctgttgttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacctata |
214 |
Q |
| |
|
||||| |||||||| || ||||| ||||| | ||||||||||| |||||||||||||||||||||| |
|
|
| T |
35228578 |
cctgtggttatttgatgaataccttctattgcagccacagttgcaaatgcccaacaactacctata |
35228643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University