View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11715_low_8 (Length: 385)
Name: NF11715_low_8
Description: NF11715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11715_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 738927 - 739275
Alignment:
| Q |
20 |
aacataacgattttagaggtcaaataaattgcaattacggtcagatataagccgcatttgcctgcattttaccgcaatttaaaacagatatatttggagt |
119 |
Q |
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| T |
738927 |
aacataacgattttagaggtcaaataaattgcaattacggtcagatataagccgcatttgcctgcattttaccgcaatttaaaacagatat--ttggagt |
739024 |
T |
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| Q |
120 |
gaggggaacttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctc |
219 |
Q |
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| T |
739025 |
gaggggaacttaccgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctc |
739124 |
T |
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| Q |
220 |
caaccttgtgaacagctgcatttgaaaccttgatagctaccatcataaccatcaagaaaactacagatctctctacaaatcccatgannnnnnnnnnnnn |
319 |
Q |
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| T |
739125 |
caaccttgtgaacagctgcatttgaaaccttgatagctaccatcataaccatcaagaaaactacagatctctctacaaatcccatga----ctctctctc |
739220 |
T |
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| Q |
320 |
agcaaggaaattagcaaaacttcctcttgaggtgtgtactaatgagactcttctt |
374 |
Q |
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| T |
739221 |
agcaaggaaattagcaaaacttcctcttgaggtgtgtactaatgagactcttctt |
739275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 47218922 - 47218784
Alignment:
| Q |
127 |
acttactgatagtgtcgccgatttggaagttcttagtagcagcccatttcttgtaatctatactaccaatgattgtccagccagaagagtctccaacctt |
226 |
Q |
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| T |
47218922 |
acttactaatagtgtcaccaagttggaagttcttggtagcagcccattttttgtagtcaatgttaccaagtgtagtccagccagcagaatcaccaacctt |
47218823 |
T |
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| Q |
227 |
gtgaacagctgcatttgaaaccttgatagctaccatcat |
265 |
Q |
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| T |
47218822 |
gtatacagctgcatatgaaatctgcatagctaccatcat |
47218784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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