View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11716_high_1 (Length: 966)

Name: NF11716_high_1
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11716_high_1
NF11716_high_1
[»] chr5 (8 HSPs)
chr5 (15-570)||(39627593-39628173)
chr5 (634-956)||(39627207-39627529)
chr5 (634-956)||(39616485-39616819)
chr5 (219-570)||(39616880-39617232)
chr5 (738-867)||(39583520-39583646)
chr5 (15-105)||(41637862-41637952)
chr5 (89-127)||(41637809-41637847)
chr5 (91-123)||(41638631-41638663)
[»] chr6 (1 HSPs)
chr6 (683-771)||(24200314-24200402)
[»] chr1 (1 HSPs)
chr1 (15-127)||(50408105-50408217)


Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 570
Target Start/End: Complemental strand, 39628173 - 39627593
Alignment:
Q  15 tgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaagttttataaacgtgatatatacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39628173 tgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaagttttataaacgtgatatatacaa 39628074  T
Q  115 gaggtaccgatcaaaatagatttcatatgacagctgannnnnnnnnnnnnnct-----gaagcaagaagactaagcattttattaataat---caaaggc 206  Q
    |||||||||||||||||||||||||||||||||||||               |     |||||| |||||||||||||||||||||||||   |||||||    
T  39628073 gaggtaccgatcaaaatagatttcatatgacagctgatttttttttttttttttttttgaagcatgaagactaagcattttattaataataatcaaaggc 39627974  T
Q  207 aaagctgaattacaaatggatgtttgatgatagaattggggactaggaagtaaccaacaacattgccatc-----------------agcttggttgatg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||                 |||||||||||||    
T  39627973 aaagctgaattacaaatggatgtttgatgatagaattggggactaggaagtaaccaacaacattgtcatcttaactaataactaggcagcttggttgatg 39627874  T
Q  290 agctaccggcaccaaaagagtcttaagttagaggccaaaagatagaatgttaggaacttacataaacactaacattggtctaacagaagaaaaaacttct 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39627873 agctaccggcaccaaaagagtcttaagttagaggccaaaagatagaatgttaggaacttacataaacactaacattggtctaacagaagaaaaaacttct 39627774  T
Q  390 agctatatttccacactgttgttggttaaataaatcaatactgaatgaatctcctccatgagcagaacaaatactaacagacctaactttaggataacat 489  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39627773 agctatatttccacactgttggtggttaaataaatcaatactgaatgaatctcctccatgagcagaacaaatactaacagacctaactttaggataacat 39627674  T
Q  490 gaaaaacagaaattaaaggtgtgcatagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactac 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39627673 gaaaaacagaaattaaaggtgtgcatagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactac 39627593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 634 - 956
Target Start/End: Complemental strand, 39627529 - 39627207
Alignment:
Q  634 gcatgtcatttttcttatctattagtcacattgtaacagggctctcaagttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaa 733  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39627529 gcatttcatttttcttatctattagtcacattgtaacagggctctcaagttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaa 39627430  T
Q  734 aattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcag 833  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39627429 aattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcag 39627330  T
Q  834 tgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacaggtaatagatggctatcaacgcagcaataataatcttattcatacgtgtaca 933  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||    
T  39627329 tgtccgtgtcttcactttcactatcactttcttcttccaaaatgtacaggtaatagatgcctatcaacgcagcaataataatcttattcatatgcgtaca 39627230  T
Q  934 atggaagattggcctttgcttct 956  Q
    |  ||| | ||||||||||||||    
T  39627229 accgaacagtggcctttgcttct 39627207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 634 - 956
Target Start/End: Complemental strand, 39616819 - 39616485
Alignment:
Q  634 gcatgtcatttttcttatctattagtcacattgtaacagggctctc------------------aagttatgagagcataaagctcaagtttccgaatca 715  Q
    |||||||||||||||||||||||||||||||||||||| |||||||                  || |||||||||||||||||||||||||||||||||    
T  39616819 gcatgtcatttttcttatctattagtcacattgtaacatggctctcaaaattcacaagcaatttaacttatgagagcataaagctcaagtttccgaatca 39616720  T
Q  716 tcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcag 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| ||||| |||||||    
T  39616719 tcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaggaacttcatttgtccttccagtactttcagtttccgtatcaatatcag 39616620  T
Q  816 tatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacaggtaatagatggctatcaacgcagcaataataat 915  Q
    ||||||||||| |||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39616619 tatctgtatcactatca------ctgtcttcactttcactgtcactttcttcttctaaaaggtacaggtaatagatgcctatcaacgcagcaataataat 39616526  T
Q  916 cttattcatacgtgtacaatggaagattggcctttgcttct 956  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  39616525 cttattcatacgcgtacaatggaagattggcctttgattct 39616485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 219 - 570
Target Start/End: Complemental strand, 39617232 - 39616880
Alignment:
Q  219 caaatggatgtttgatgatagaattggggactaggaagtaaccaacaacattgccatc----------agcttggttgatgagctaccggcaccaaaaga 308  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||| || |          ||||||||||||||||||  | |||  |||||    
T  39617232 caaatggatgtttgatgatagaattggggactaggcagtaaccaacaatattgtcaccttaactaggcagcttggttgatgagctagtgacactgaaaga 39617133  T
Q  309 gtcttaagttagaggccaaaagatagaatgttaggaacttacataaacactaacattggtctaacagaagaaaaaacttctagctatatttccacactgt 408  Q
    |||||||||||||              | |||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  39617132 gtcttaagttaga--------------acgttaggaacttacataaatactaacatcagtctaacagaagaaaaaacttctagttatatttccacactgt 39617047  T
Q  409 tgttggttaaataaatcaatactgaatgaatctcctccatgagcagaacaaatactaacagacctaactttaggataacatgaa---------aaacaga 499  Q
    || ||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||         |||||||    
T  39617046 tggtggttaaataaatcaatact----gaatctcctccatgagcagaacaaataccaacagacctgactttagggtaacatgaaaaacagaagaaacaga 39616951  T
Q  500 aattaaaggtgtgcatagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactac 570  Q
    ||| |||| ||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||    
T  39616950 aatcaaagctgtgcatagcaaagaggaaaaattgtttcttatggcactttagttcaataatccaaaactac 39616880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 738 - 867
Target Start/End: Original strand, 39583520 - 39583646
Alignment:
Q  738 gcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtc 837  Q
    |||| |||||||||||||||||||||    ||||||| |||||||||| ||||||||| ||||| |||||  |||||||||| |||||| |||| |||||    
T  39583520 gcagttgtttccttttctattgatcag---gaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatctgtgtc 39583616  T
Q  838 cgtgtcttcactttcactatcactttcttc 867  Q
     ||||||||||||||||| |||||||||||    
T  39583617 tgtgtcttcactttcactgtcactttcttc 39583646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 41637952 - 41637862
Alignment:
Q  15 tgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaagttttataaacgtga 105  Q
    ||||||||||   |||||||| |||||  |||||||||| |||||||||| | |||||  || ||||||||||||||||||||||||||||    
T  41637952 tgtctttcattattatcactgtagctactttgtttggtgccattatttcacttattttagtggctagaacaattaagttttataaacgtga 41637862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 41637847 - 41637809
Alignment:
Q  89 aagttttataaacgtgatatatacaagaggtaccgatca 127  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41637847 aagttttataaacgtgatatatacaagaggtaccgatca 41637809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 41638631 - 41638663
Alignment:
Q  91 gttttataaacgtgatatatacaagaggtaccg 123  Q
    |||||||||||||||||||||||||||||||||    
T  41638631 gttttataaacgtgatatatacaagaggtaccg 41638663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 683 - 771
Target Start/End: Complemental strand, 24200402 - 24200314
Alignment:
Q  683 ttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaac 771  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||    
T  24200402 ttatgagagcataaagctcaagtttccaaatcttcccttttctactaacaaagttgcagctgttttcttttctattgatcatcaggaac 24200314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 50408105 - 50408217
Alignment:
Q  15 tgtctttcatgtctatcactgcagctaacttgtttggtgtcattatttcagtaattttgttgactagaacaattaagttttataaacgtgatatatacaa 114  Q
    ||||||||||   ||||||||||||||  |||||||||| |||||||||| | |||||  || | ||||||| ||||||||||||| |||||||||||||    
T  50408105 tgtctttcattattatcactgcagctactttgtttggtgccattatttcacttattttagtggccagaacaaataagttttataaaggtgatatatacaa 50408204  T
Q  115 gaggtaccgatca 127  Q
    |||||||||||||    
T  50408205 gaggtaccgatca 50408217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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