View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_high_12 (Length: 392)
Name: NF11716_high_12
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 41408639 - 41408998
Alignment:
| Q |
15 |
atgaaactgtaagcctttttgggttgaccaaacctctttccacccttagttttagagtggagaaataaa-tgtgaattcttatttctaaagtagaaggga |
113 |
Q |
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| T |
41408639 |
atgaagctgtaagcctttttgggttgaccaaacctctttccacccttagttttagagtggagaaataaaatgtgaattcttatttctgaagtagaaggga |
41408738 |
T |
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| Q |
114 |
gggaacaattgagcannnnnnnnaaacggttatactaaagatttacaannnnnnnattaaataaaataaagacttacttgataatatttgataatatgat |
213 |
Q |
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| T |
41408739 |
gggaataattgagcattttttttaaacggttatactaaagatttacaatttttttattaaataaaataaagacttacttgataatatttgataat----- |
41408833 |
T |
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| Q |
214 |
ggattcttaattgatgatagtataaaactactaagagttaaaacttttaagatgaatttatcgtccatttaaatcttataaaattaaaaaccaatttcta |
313 |
Q |
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| T |
41408834 |
ggatttttaattgattatagtataaaattattaagagttaaaactcttaagatgagtttgtcgtccatttaaatcttataaaattaaaaaccaatttcta |
41408933 |
T |
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| Q |
314 |
caattatgtgtgatggatacctgaatcatacttgcaaaaattctccacacttaacaatacaaact |
378 |
Q |
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| T |
41408934 |
caattatgtgtgatggatacctgaatcatacttgcaaaaattctccacacttaacaatacaaact |
41408998 |
T |
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