View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_high_14 (Length: 377)
Name: NF11716_high_14
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 36835529 - 36835160
Alignment:
| Q |
1 |
catgtttgaaggaggacatggtagtagaatgcaacatggagttaaattgatagaacttgttggattggagtggagaataccctctaaataaaggcctata |
100 |
Q |
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| T |
36835529 |
catgtttgaaagaggacatggtagtagaatgcaacatggagttaaattgatagaacttgttggattggagtggaaaataccctctaaataaaggcctata |
36835430 |
T |
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| Q |
101 |
tatatatgcaactacaatatgatcatatat--gaatgtggaagacaatcatcacacattatatataa-cccatggtggaaaaaacgttggtgtggagaat |
197 |
Q |
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| T |
36835429 |
tat----gcaactacaatataatcatatatatgaatgtggaagacaatcatcacacattatatataaacccatggtggaaaaaacgttggtctggagaat |
36835334 |
T |
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| Q |
198 |
ggaaaaagaataaaatgaggactcagcaaaatatattttagtgaagttataaattattcatacggagaggtattgaga--------aattaagtaaaggt |
289 |
Q |
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| T |
36835333 |
ggaaaaagaataaaatgaggactcagcaaaatatattttagtgaagttataaattattcatacggagaggtattgagaaatatagtaattaagtaaaggt |
36835234 |
T |
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| Q |
290 |
gtggtgggactcttcactttatggctactttgcttgtaactagagcctagaggggctttaatgctgctattatt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36835233 |
gtggtgggactcttcactttatggctactttgcttgtaactagagcctagaggggctttaatgctgctattatt |
36835160 |
T |
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