View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_high_2 (Length: 844)
Name: NF11716_high_2
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 363 - 676
Target Start/End: Original strand, 46279392 - 46279705
Alignment:
| Q |
363 |
gcatggctaatttgaacttacttgttgaaggttattgagagaattgaacatcataggtggactccatttgctcataatgaacaaagaattatcttcatct |
462 |
Q |
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| T |
46279392 |
gcatggctaatttgaacttacttgttgaaggttattgagagaattgaacatcataggtggactccatttgctcataatgaacaaagaattatcttcatct |
46279491 |
T |
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| Q |
463 |
gaatgttgttcctttgctttttgagagcttgtttctacttcagcctcatcaatcagcttcacatgatcaaaggaaggatgattcacaccttgagtactct |
562 |
Q |
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| T |
46279492 |
gaatgttgttcctttgctttttgagagcttgtttctacttcagcctcatcaatcagcttcacatgatcaaaggaaggatgagtcacaccttgagtactct |
46279591 |
T |
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| Q |
563 |
gatgtgtacctgcagattcttccacactttcaaaggggttccaaatgaggttagtttttattccttcttcattgtattgctttgaatttgattcatcaac |
662 |
Q |
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| T |
46279592 |
gatgtgtacctgcagattcttccacactttcaaaggggttccaaatgaggttagtttttattccttcttcattgtattgctttgaatttgattcatcaac |
46279691 |
T |
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| Q |
663 |
tagtgatgttctag |
676 |
Q |
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| T |
46279692 |
tagtgatgttctag |
46279705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 46279028 - 46279336
Alignment:
| Q |
1 |
aaacaaacaagaaagtggcaacactttaaatagagatgacatacacacacaacaatatttatgaaatattgtttccaaaattctgaagatacctcaccac |
100 |
Q |
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| T |
46279028 |
aaacaaacaagaaagtggcaacactttaaatagagatgacatacacacacaacaatatttatgaaatattgtttccaaaattctgaagatacctcaccac |
46279127 |
T |
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| Q |
101 |
ataacattccaaaaaggaaagcaaagaaataacacagcaatgcataatgcattttattctgagcctgactgacacaaaaaggaggaggtgatgataaggg |
200 |
Q |
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| T |
46279128 |
ataacattccaaaaaggaaagcaaagaaataacacagcaatgcataatgcattttattctgagcctgactgacacaaaaaggaggaggtgatgataaggg |
46279227 |
T |
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| Q |
201 |
gtgcaagtacggtagcatgttaattaaatgcggttgttgtatgcttcccaaggtttttccatggattggtgaaattgttcaaattgatgctgcaaacaat |
300 |
Q |
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| T |
46279228 |
gtgcaagtacggtagcatgttaattaaatgcggttgttgtatgcttcccaaggtttttccatggattggtgaaattgttcaaattgatgctgcaaacaat |
46279327 |
T |
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| Q |
301 |
ttcatgatt |
309 |
Q |
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| T |
46279328 |
ttcatgatt |
46279336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 729 - 828
Target Start/End: Original strand, 46279758 - 46279857
Alignment:
| Q |
729 |
acctatagaattgaatgcactctttctacaaaccttgttagtactatttcttctcttcataacaagtttttgttgttgtggttcttcttgatttccaact |
828 |
Q |
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| T |
46279758 |
acctatagaattgaatgcactctttctacaaaccttgttagtactatttcttctcttcataacaagtttttgttgttgtggttcttcttgatttccaact |
46279857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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