View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11716_high_27 (Length: 206)

Name: NF11716_high_27

Description: NF11716

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11716_high_27

[»] chr3 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 86; E-Value: 3e-41

Query Start/End: Original strand, 60 - 192

Target Start/End: Complemental strand, 50915485 - 50915350

Alignment:

Q	60	gaatataacaatataataa---cgataaaacacacatcatgatcatgggtcaaactagaaagtcactcnnnnnnnnnnnncacataaaagcataataaat	156	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50915485	gaatataacaatataataataacgataaaacacacatcatgatcatgggtcaaactagaaagtcactcaaaaaacaaaaacacataaaagcataataaat	50915386	T

Q	157	ctacattgcagccaagtttcattcattcaaatgccc	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	50915385	ctacattgcagccaagtttcattcattcaaatgccc	50915350	T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 143 - 192

Target Start/End: Original strand, 37466262 - 37466311

Alignment:

Q	143	aaagcataataaatctacattgcagccaagtttcattcattcaaatgccc	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37466262	aaagcataataaatccaaattgcacccaaatttaattcattcaaatgccc	37466311	T

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