View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_high_4 (Length: 648)
Name: NF11716_high_4
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Original strand, 33415325 - 33415888
Alignment:
| Q |
18 |
attcttcgctccattgtgtggcccctgcaagaatgttgatttcaaaatggttgagctggcaaatgaatatgcaggtgaggtcgagtttttcaaactcaat |
117 |
Q |
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| T |
33415325 |
attcttcgctccattgtgtagcccctgcaagaatgttgatttcaaaatggttgagctggcaaatgaatatgcaggtgaggtcgagtttttcaaattcaat |
33415424 |
T |
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| Q |
118 |
gttgatgaaaatcaacttattccttctaaatataggattaaaggtattccaaatgtccttatcttcaaaaatggtgaacaaagagatacactttttggta |
217 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415425 |
gttgatgacaatcaacttattccttctaaatatgggattaaaggtattccaaatgtccttatcttcaaaaatggtgaacaaagagatacactttttggta |
33415524 |
T |
|
| Q |
218 |
acttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggcaannnnnnnnnnngttgcatgttttgctttcttgaataatcatcaa |
317 |
Q |
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| T |
33415525 |
acttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggctatatttttttttgttgcatgttttgctttcttgaataatca---a |
33415621 |
T |
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| Q |
318 |
tcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtactt |
417 |
Q |
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| T |
33415622 |
tcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtactt |
33415721 |
T |
|
| Q |
418 |
gaaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgac-ttatgatacata |
516 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
33415722 |
gaaaaaatgaagtatttgtatcaaat--acgaatttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgactttatgatagata |
33415819 |
T |
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| Q |
517 |
aacacaataatataatggtatttgtgtatttgagttttgctgttgtaagcaaaccacattttcttaaaa |
585 |
Q |
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| T |
33415820 |
aacacaataatataatggtatttgtgtatttgagttttgctgttgtaagaaagccacattttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 51 - 272
Target Start/End: Original strand, 33409926 - 33410144
Alignment:
| Q |
51 |
tgttgatttcaaaatggttgagctggcaaatgaatatgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatcaacttattccttctaaatat |
150 |
Q |
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|||| ||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |||| |||| ||||| | |||| |
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| T |
33409926 |
tgttcattccaaaatggttgagctggcaaatgattatgcaggtgcggtcaagtttttcaaactcaatgttgatgacaatcgacttgctccttatgcatat |
33410025 |
T |
|
| Q |
151 |
aggattaaaggtattccaaatgtccttatcttcaaaaatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatcagacgtatgg |
250 |
Q |
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| T |
33410026 |
tggattcaagttcttccaactgtccttttcttcaagaatggtgaacacagatatagac---ttcataacgtatccaagacaacgtttctcaaacatatta |
33410122 |
T |
|
| Q |
251 |
aacaaaacctatgagatgggca |
272 |
Q |
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|||||||||||||||||||||| |
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| T |
33410123 |
aacaaaacctatgagatgggca |
33410144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 389 - 502
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
389 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
483 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
484 |
gttgtaagtgaaatttgtg |
502 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 33397558 - 33397735
Alignment:
| Q |
63 |
aatggttgagctggcaaatgaatatgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatcaacttattccttctaaatataggattaaaggt |
162 |
Q |
| |
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||||||||||||||||||||| |||| ||| |||||||||||| |||||| ||| | ||||| |||||| ||||||| | ||||| ||||| ||||| |
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| T |
33397558 |
aatggttgagctggcaaatgattatgagggtaaggtcgagttttacaaactaaatatggatgacaatcaaaatattcctgttgaatatgggattcaaggt |
33397657 |
T |
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| Q |
163 |
attccaaatgtccttatcttcaaaaatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatc |
240 |
Q |
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||||||| |||| || ||||||| |||||||||||| ||||| | || ||||| | || |||||||||| |||||| |
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| T |
33397658 |
attccaactgtcattttcttcaagaatggtgaacaagtagatataattgttggtcatgtaaccaaggcaacatttatc |
33397735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 33399744 - 33399811
Alignment:
| Q |
63 |
aatggttgagctggcaaatgaatatgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatc |
130 |
Q |
| |
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||||||||||||||||||||| ||||| ||| ||||||| |||| |||||||||| ||||||| |||| |
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| T |
33399744 |
aatggttgagctggcaaatgattatgctggtaaggtcgatttttacaaactcaatattgatgagaatc |
33399811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
369 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
424 |
Q |
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||||| ||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 33397852 - 33397901
Alignment:
| Q |
337 |
aaaaaattataatcatttatgggatgattcccatattgtggtttttagat |
386 |
Q |
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|||||| |||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
33397852 |
aaaaaagtataataatttatggggtgatttgcatattgtggtttttagat |
33397901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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