View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11716_high_5 (Length: 614)

Name: NF11716_high_5
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11716_high_5
NF11716_high_5
[»] chr7 (8 HSPs)
chr7 (12-596)||(7194347-7194946)
chr7 (15-94)||(18995703-18995782)
chr7 (12-90)||(28087851-28087928)
chr7 (12-72)||(24055996-24056056)
chr7 (15-92)||(46857288-46857365)
chr7 (15-92)||(23846668-23846745)
chr7 (12-77)||(39605467-39605535)
chr7 (30-91)||(24687890-24687953)
[»] chr2 (4 HSPs)
chr2 (72-221)||(37787650-37787799)
chr2 (15-180)||(37787485-37787641)
chr2 (15-94)||(42757388-42757467)
chr2 (15-94)||(20125386-20125464)
[»] chr3 (8 HSPs)
chr3 (12-94)||(15819570-15819652)
chr3 (15-73)||(37979095-37979153)
chr3 (15-82)||(38112156-38112223)
chr3 (15-97)||(3330976-3331058)
chr3 (15-90)||(6513146-6513220)
chr3 (15-80)||(11985811-11985876)
chr3 (12-66)||(818507-818560)
chr3 (12-66)||(40474774-40474827)
[»] chr4 (3 HSPs)
chr4 (15-89)||(8016461-8016535)
chr4 (15-90)||(13434576-13434650)
chr4 (12-66)||(32105935-32105988)
[»] chr1 (4 HSPs)
chr1 (15-90)||(32907581-32907655)
chr1 (15-73)||(25647066-25647124)
chr1 (15-66)||(16814700-16814751)
chr1 (12-66)||(51995710-51995763)
[»] chr8 (1 HSPs)
chr8 (15-93)||(34967407-34967485)
[»] scaffold0625 (1 HSPs)
scaffold0625 (15-94)||(874-953)
[»] chr5 (3 HSPs)
chr5 (15-82)||(17360917-17360984)
chr5 (15-88)||(11077822-11077895)
chr5 (26-92)||(31254157-31254223)
[»] scaffold0044 (1 HSPs)
scaffold0044 (16-92)||(21676-21752)


Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 12 - 596
Target Start/End: Original strand, 7194347 - 7194946
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacaccgaaacgtacccgtaaa 111  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7194347 acagacaacaggtacatgaccatttctagcctagaagatttgttacgaagcacatccatgatcttggaggaccaatacaacaccgaaacgtacccgtaaa 7194446  T
Q  112 agggttttgaaaccagatccaacctcaacgaaccaccaaacgtttacattgttgctcagaacagtacaaagcgaaacaaaggcgttaaggtcttaacacc 211  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7194447 agggttttgaaaccaaatccaacctcaccgaaccaccaaacgtttacattgttgctcagaacaatacaaagcgaaacaaaggcgttaaggtcttaacacc 7194546  T
Q  212 atgagagagatccgaatccggagtaaacccaaattaagtcaaccataaca--------------tcaacaatccatatccacccttccatctacattaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||| ||| ||||    
T  7194547 atgagagagatccgaatccggagtaaacccaaattaagtcaaccataacaagaactgaaacccatcaacaatccatatccacccttccatcgacactaat 7194646  T
Q  298 ccaccgcagagaaactccaatgaaacaaaccacggcggcacaagggaggaggcgaccaccgtggggatctgaaacaaaccggccaccacacgccgctgtc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7194647 ccaccgcagagaaactccaatgaaacaaaccacggcggcacaagggaggaggcgaccaccgtggggatctgaaacaaaccggctaccacacgccgctgtc 7194746  T
Q  398 gtgtttgtgcgtaacattttatgaaaataatagttcatatatattaaaaattatcaaaggtaaaatacaagcatttgaaacttcagttctcaaaaatatt 497  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7194747 gtgtttgtgcgtaacattttatgaaaataatagtttatatatattaaaaattatcaaaggtaaaatacaagcatttgaaacttcagttctcaaaaatatt 7194846  T
Q  498 aaaatgatttagttggtatatgtttacttgatgaataactttttaaccaagaaacctt-gataaattaatttgtaaatatatcaataattaaattaattg 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7194847 aaaatgatttagttggtatatgtttacttgatgaataactttttaaccaagaaaccttagataaattaatttgtaaatatatcaataattaaattaattg 7194946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 18995703 - 18995782
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacac 94  Q
    ||||||| ||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||  ||||||||||    
T  18995703 gacaacatgtacatgaccatttctagcctagaaaacctattaagaagcacatccatgatcttggaggagtaatacaacac 18995782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 28087851 - 28087928
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaataca 90  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| |||| |||||||    
T  28087851 acagataacaggtacatgaccatttctagcctagaagaaatgttacgaagcacat-catgatcttgaaggagcaataca 28087928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 24056056 - 24055996
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatga 72  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  24056056 acagacaacaggtaaatgaccatttctagcctagaagacctgttacgaatcacatccatga 24055996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 46857365 - 46857288
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaac 92  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| |  || |||||||||||||| |||||||||    
T  46857365 gacaacaagtgcatgaccatttctagcctagaagacctgttacgaagaatgtctatgatcttggaggagcaatacaac 46857288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 23846668 - 23846745
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaac 92  Q
    ||||||| || ||||||||||||||| ||||||||| |||||||||| |  || |||||||||||||| |||||||||    
T  23846668 gacaacaagtgcatgaccatttctagactagaagacctgttacgaagaatgtctatgatcttggaggagcaatacaac 23846745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 39605535 - 39605467
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcac---atccatgatcttg 77  Q
    |||||||||| ||  |||||||||||||||||| |||||||||||||||||||   |||||||||||||    
T  39605535 acagacaacaagtgtatgaccatttctagcctataagacttgttacgaagcacaatatccatgatcttg 39605467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 24687953 - 24687890
Alignment:
Q  30 accatttctagcctagaag--acttgttacgaagcacatccatgatcttggaggaccaatacaa 91  Q
    |||||||||||||||||||  || ||||||||| ||||||||| |||||||| || ||||||||    
T  24687953 accatttctagcctagaagacacatgttacgaaacacatccattatcttggaagagcaatacaa 24687890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 37787650 - 37787799
Alignment:
Q  72 atcttggaggaccaatacaacaccgaaacgtacccgtaaaagggttttgaaaccagatccaacctcaacgaaccaccaaacgtttacattgttgctcaga 171  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||| ||  ||||||  ||||||||||    
T  37787650 atcttggaggagcaatacaacaccgaaacatacccgtaaaagggttttgaaaccaaatcaaccctcaacgaaccaccgaatatttacaacgttgctcaga 37787749  T
Q  172 acagtacaaagcgaaacaaaggcgttaaggtcttaacaccatgagagaga 221  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  37787750 acagtacaaagcgaaacagaggcgttaaggtcttaacaccatgaaagaga 37787799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 37787485 - 37787641
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacaccgaaacgtacccgtaaaagg 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||           |||||||| || ||||||||| |||| ||||||||| |||    
T  37787485 gacaataggtacatgaccatttctagcctagaagacttgttacgaagcat----------ttggaggagcactacaacaccaaaacatacccgtaagagg 37787574  T
Q  115 g-ttttgaaaccagatccaacctcaacgaaccaccaaacgtttacattgttgctcagaacagtacaa 180  Q
    | ||||||||||||||||| ||||||||||||||| || |||| || | |||||||||| |||||||    
T  37787575 ggttttgaaaccagatccaccctcaacgaaccaccgaatgtttgcactcttgctcagaatagtacaa 37787641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 42757467 - 42757388
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacac 94  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| | |||||||||||    
T  42757467 gacaacaggtacatgaccatttctaacctagaagacctgttacaaagcacatccatgatcttggagtagcaatacaacac 42757388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 20125464 - 20125386
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacac 94  Q
    ||||||| |||||||||||||||||||||| ||||| ||||  ||||||||||||| || |||||||| |||||||||||    
T  20125464 gacaacaagtacatgaccatttctagcctaaaagacctgttgtgaagcacatccat-attttggaggagcaatacaacac 20125386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 15819652 - 15819570
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacac 94  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| || ||||||||    
T  15819652 acagacaacaggtacatgaccatttctagcctagatgacctgttacgaagcacgtccatgatcttggaggagcagtacaacac 15819570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 37979095 - 37979153
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgat 73  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37979095 gacaacaggtacatgaccatttctagcctagaagacctgttacgaagcacatccatgat 37979153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 38112156 - 38112223
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggagga 82  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||    
T  38112156 gacaacaggtacataaccatttctagcctagaagacctgttacgaaacacaaccatgattttggagga 38112223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 3330976 - 3331058
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacaccga 97  Q
    ||||||| || ||||||||||||||||||||||||| | ||||||||||  || |||||||||||||| ||||||||| ||||    
T  3330976 gacaacaagtgcatgaccatttctagcctagaagacctattacgaagcatgtctatgatcttggaggagcaatacaacgccga 3331058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 6513146 - 6513220
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaataca 90  Q
    |||||||||| || |||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||||    
T  6513146 gacaacaggttcaagaccatttctagcctagaagacatgttaggaagcacat-catgatcttgaaggagcaataca 6513220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 11985811 - 11985876
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggag 80  Q
    |||||||||||||||| |||||||||||||||| || ||||| ||||||||| || ||||||||||    
T  11985811 gacaacaggtacatgatcatttctagcctagaacacctgttatgaagcacattcacgatcttggag 11985876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 818507 - 818560
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacat 66  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||||||||||    
T  818507 acagacaacagg-acatgaccatttctagccttgaagacctggtacgaagcacat 818560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 40474827 - 40474774
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacat 66  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||||||||||    
T  40474827 acagacaacagg-acatgaccatttctagccttgaagacctggtacgaagcacat 40474774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 8016461 - 8016535
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatac 89  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  8016461 gacaacaagtacatgaccatttctagcctagaagacctgttatgaagcacatccatgatcttggaggagcaatac 8016535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 13434650 - 13434576
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaataca 90  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  13434650 gacaacatgtacatgactatttctagcctagaagacatgttacgaagcacat-catgatcttggaggagcaataca 13434576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 32105935 - 32105988
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacat 66  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||||||||||    
T  32105935 acagacaacagg-acatgaccatttctagccttgaagacctggtacgaagcacat 32105988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 32907655 - 32907581
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaataca 90  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  32907655 gacaacaggtacgtgaccatttctagcctagaagacctgttacgaagcacat-catgatcttggaggagcaataca 32907581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 25647066 - 25647124
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgat 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25647066 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacattcatgat 25647124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 16814751 - 16814700
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacat 66  Q
    ||||||| |||||||||||||||||| |||||| || |||||||||||||||    
T  16814751 gacaacaagtacatgaccatttctagtctagaaaacctgttacgaagcacat 16814700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 51995710 - 51995763
Alignment:
Q  12 acagacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacat 66  Q
    |||||||||||  ||||||||||||||||||| |||||| || ||||||||||||    
T  51995710 acagacaacaga-acatgaccatttctagccttgaagacctggtacgaagcacat 51995763  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 34967485 - 34967407
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaaca 93  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||    
T  34967485 gacaacatgtgcatgaccatttctagcctagaagacctgttacgaagcaaatccattatcttggaggagcaatacaaca 34967407  T

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Target: scaffold0625 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 953 - 874
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaacac 94  Q
    ||||||| ||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||  ||||||||||    
T  953 gacaacatgtacatgaccatttctagcctagaaaacctattaagaagcacatccatgatcttggaggagtaatacaacac 874  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 17360984 - 17360917
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggagga 82  Q
    |||||||||||||| ||||||||||| ||| ||||| ||||||||| |||| ||||||||||||||||    
T  17360984 gacaacaggtacataaccatttctagtctaaaagacctgttacgaaacacaaccatgatcttggagga 17360917  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 11077822 - 11077895
Alignment:
Q  15 gacaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaata 88  Q
    ||||||| || |||||||||||||| |||||||||| ||||||||||||  || |||||||||||||| |||||    
T  11077822 gacaacaagtgcatgaccatttctaacctagaagacctgttacgaagcatgtctatgatcttggaggagcaata 11077895  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 31254157 - 31254223
Alignment:
Q  26 catgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaac 92  Q
    |||||||||||||| |||||||||| |||||||||| |  || |||||||||||||| |||||||||    
T  31254157 catgaccatttctaccctagaagacctgttacgaagaatgtctatgatcttggaggagcaatacaac 31254223  T

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Target: scaffold0044 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 21752 - 21676
Alignment:
Q  16 acaacaggtacatgaccatttctagcctagaagacttgttacgaagcacatccatgatcttggaggaccaatacaac 92  Q
    |||||| || ||||||||||||||||||||||||| |||||||||| |  |  |||||||||||||| |||||||||    
T  21752 acaacaagtgcatgaccatttctagcctagaagacctgttacgaagaatgtttatgatcttggaggagcaatacaac 21676  T

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