View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_high_9 (Length: 452)
Name: NF11716_high_9
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 38605245 - 38605678
Alignment:
| Q |
1 |
agtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38605245 |
agtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagagattccaaaacaggggtagtgatgagatgtgaat |
38605344 |
T |
|
| Q |
101 |
tactcctaaaagcccacttgataaagtgaataagattatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605345 |
tactcctaaaagcccacttgataaagtgaataagaatatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgag |
38605444 |
T |
|
| Q |
201 |
tagaaaatgtggttgat-------gctgatgcagagtttccaagcatgtgaaactgaaacatctattaaatttgtaataataattatggagaggaggagg |
293 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
38605445 |
tagaaaatgtggttgatgctgatggctgatgcagagtttccaagcatgtgaaactgaaacatctattaaatttgtaattataattatgga---gaggagg |
38605541 |
T |
|
| Q |
294 |
agtaccactaagaaatgtcattactatccggaaatcttcagatgcagtgacatcatctggacaaggaggaaggtaagtgtaagtgtaaccttgagaagaa |
393 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38605542 |
agtaccactaagaaatgtcatcactatccggaaatcttcagatgcagtgacatcgtctggacaaggaggaaggtaagtgtaagtgtagccttgagaagaa |
38605641 |
T |
|
| Q |
394 |
gagtgaagattatcatctttggagtgcagcagcagca |
430 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
38605642 |
gagtgacgattatcatctttggagtgcagcagcagca |
38605678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 40180851 - 40180884
Alignment:
| Q |
61 |
acaagggattccaaaacaggggtagtgatgagat |
94 |
Q |
| |
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||||||||||||| |||||||||||||||||||| |
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|
| T |
40180851 |
acaagggattccagaacaggggtagtgatgagat |
40180884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 44460121 - 44459952
Alignment:
| Q |
49 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
139 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||||| | || | ||||| | |||||||||| |||||||| |||||||||| |
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| T |
44460121 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44460022 |
T |
|
| Q |
140 |
gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
209 |
Q |
| |
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|||| ||||||||||||||||||| | | ||||||| ||||||||||||||| |||||||| |||||| |
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| T |
44460021 |
gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg |
44459952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 44467654 - 44467485
Alignment:
| Q |
49 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat |
139 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| | || | ||||| | |||||||||| |||||||| |||||||||| |
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| T |
44467654 |
catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat |
44467555 |
T |
|
| Q |
140 |
gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
209 |
Q |
| |
|
|||| ||||||||||||||||||| | | ||||||| ||||||||||||||| |||||||| |||||| |
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| T |
44467554 |
gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg |
44467485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 34502528 - 34502698
Alignment:
| Q |
49 |
catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta---------ctcctaaaagcccacttgataaa-gtgaataagatta |
138 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| ||||||||| || | ||||| |||||||||| ||||| ||| ||||||||| |
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| T |
34502528 |
catattgctgaaacaagggattccagaacaagggtagtaatgagatgtttataagtgttcctcctcctccaagcccacttcataaaagtggataagatta |
34502627 |
T |
|
| Q |
139 |
tgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg |
209 |
Q |
| |
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||||| |||||||||||||||||| | | |||||||| | |||| |||||||| |||||||| |||||| |
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| T |
34502628 |
tgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttgagtacaaaatg |
34502698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 44459420 - 44459275
Alignment:
| Q |
48 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44459321 |
T |
|
| Q |
148 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataa |
193 |
Q |
| |
|
|||||||||| |||||| | |||||||||| ||||||||||||| |
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| T |
44459320 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataa |
44459275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 44466953 - 44466808
Alignment:
| Q |
48 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
44466854 |
T |
|
| Q |
148 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataa |
193 |
Q |
| |
|
|||||||||| |||||| | |||||||||| ||||||||||||| |
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| T |
44466853 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataa |
44466808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 46358991 - 46358821
Alignment:
| Q |
48 |
gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa |
147 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| | ||| || | || || |||| ||||||| |||||||||||||| | |
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|
| T |
46358991 |
gcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga |
46358892 |
T |
|
| Q |
148 |
acctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
218 |
Q |
| |
|
|||||||||| |||||| | |||||||||| ||||||||||||| ||| ||| ||| ||| ||||||| |
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|
| T |
46358891 |
acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 410732 - 410692
Alignment:
| Q |
48 |
gcatattgctgaaacaagggattccaaaacaggggtagtga |
88 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| |
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|
| T |
410732 |
gcatattgctgaaataagggactccagaacaggggtagtga |
410692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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