View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_low_1 (Length: 1295)
Name: NF11716_low_1
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 740; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 19 - 864
Target Start/End: Complemental strand, 45746080 - 45745237
Alignment:
| Q |
19 |
cttgagagatcggctctaatagatcttgcattggctgctatggatgaattattaaagatggctcagacagatagtcctgtttggattaagggtttggatg |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746080 |
cttgagagatcggctctaatagatctagcattggctgctatggatgaattattaaagatggctcagacagatagtcctgtttggattaagggtttggatg |
45745981 |
T |
|
| Q |
119 |
gagagagagacatgttgaatcaagaagagtatgcacggttgatttcttcttgtattggtcctaaacccgctggctttgtcactgaagctacgagagatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745980 |
gagagagagacatgttgaatcaagaagagtatgcacggttgatttcttcttgtattggtcctaaacccgctggctttgtcactgaagctacgagagatac |
45745881 |
T |
|
| Q |
219 |
tgggatagtaataatcaacagtttagcacttgtggaaactttgatggatgcggtatgattatcaaatactctacctcatggtgttctttgtaatttaacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45745880 |
tgggatagtaataatcaacagtttagcacttgtggaaactttgatggatgcggtatgattatcaaatattctacctcatggtgttctttgtaatttaacc |
45745781 |
T |
|
| Q |
319 |
gattttgataggaaattttgtagccaccattttctgagtgatatagnnnnnnnnnnnnaattgccatcaatgtttgtgtaggtttgtttagtatatcgtt |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45745780 |
gattttgataggaaattttgtagccaccattttctgagcgatacagtttttgttttttaattaccatcaatgtttgtgtaggtttgtttagtatatcgtt |
45745681 |
T |
|
| Q |
419 |
ttaattgattattattttcttgaatagaatcgatacgcagatatgtttcagtctatgattgctagatctgccaaccttgatgttttatctggtggaatcg |
518 |
Q |
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| T |
45745680 |
ttaattgattattattttcttgaatagaatcgatacgcagatatgtttcagtctatgattgctagatctgccaaccttgatgttttatctggtggaatcg |
45745581 |
T |
|
| Q |
519 |
gtggaaccagaaatggtgctatacatttggtatgnnnnnnnnnnnctgttgctgtatataagtttgcttcaatgtgctttggtttgctggagcttactag |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45745580 |
gtggaaccagaaatggtgctatacatttggtacg--tttttttttctgttgctgtatataagtttgcttcaatgtgccttggtttgctggagcttactag |
45745483 |
T |
|
| Q |
619 |
gattatgcaatttcagatgcataccgaggttcaattgctctcaccactagtcccggttcgtcaagtgagaatccttcggttctgtaagcagcatgcagaa |
718 |
Q |
| |
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| T |
45745482 |
gattatgcaatttcagatgcataccgaggttcaattgctctcaccactagtcccggttcgtcaagtgagaatccttcggttctgtaagcagcatgcagaa |
45745383 |
T |
|
| Q |
719 |
ggtgtatgggcagtggttgatgtttctgttgagattggtcatgatccttctaatgcacaaccattcataagctgtagaagacttccttctggctgtattg |
818 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45745382 |
ggtgtatgggcagtggttgatgtttctgttgagattggtcatgatccttctaatgcacaaccattcataagctgcagaagacttccttctggctgtattg |
45745283 |
T |
|
| Q |
819 |
tgcaggatatgccaaatggttactccaaggtaagtgctaatccaag |
864 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745282 |
tgcaggatatgccaaatggttactccaaggtaagtgctaatccaag |
45745237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 927 - 1282
Target Start/End: Complemental strand, 45745174 - 45744819
Alignment:
| Q |
927 |
atagtgactgctctatctaaatagaataaggttgacatttgcccgagaaatcagttttttggtagnnnnnnnacttgtttagttgggaagatgcttattg |
1026 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45745174 |
atagtgactgctctatctaaatagaataaggttgaaatttgcccgagaaatcagttttttggtagtttttttacttgtttagttgggaagatgcttattg |
45745075 |
T |
|
| Q |
1027 |
tctgtacttagattgtccacttctagtactcctagagattagtgaatcaaggcttatattgtttagctttgaaacttcatatatctgtttggcatctttt |
1126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45745074 |
tctgtacttagattgtccacttctagtactcctagagattagtgaatcaaggcttatattgtttagctttgaaacttcatatatctgtttggcatctttt |
45744975 |
T |
|
| Q |
1127 |
agtatttaaaactgcatggaaattttaaatcttggatttttcaatctttgctgtataaacaatacagttgatgcttctattcctgtctcctttagtataa |
1226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45744974 |
agtatttaaaactgcatggaaattttaaatcttggatttttcaatctttgctgtataaacaatacagttgatgcttctattcctgtctcctttagtataa |
45744875 |
T |
|
| Q |
1227 |
aatatttgttttttaccgtgtacgagaccaatatgacctggatccagttctctgct |
1282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45744874 |
aatatttgttttttaccgtgtacgagaccaatatgacctggatccagttctctgct |
45744819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 800 - 851
Target Start/End: Complemental strand, 12325558 - 12325507
Alignment:
| Q |
800 |
cttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaa |
851 |
Q |
| |
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||||| ||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
12325558 |
cttccctctggttgtgttgtgcaagatatgccaaatggttactccaaggtaa |
12325507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 790 - 851
Target Start/End: Complemental strand, 28597423 - 28597362
Alignment:
| Q |
790 |
ctgtagaagacttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaa |
851 |
Q |
| |
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|||||| || ||||||||||| ||| | || || |||||||||||||||||||| ||||||| |
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| T |
28597423 |
ctgtaggaggcttccttctggttgtgtggttcaagatatgccaaatggttactctaaggtaa |
28597362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 704 - 741
Target Start/End: Complemental strand, 28597512 - 28597475
Alignment:
| Q |
704 |
aagcagcatgcagaaggtgtatgggcagtggttgatgt |
741 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| |
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| T |
28597512 |
aagcaacatgcagaaggggtatgggcagtggttgatgt |
28597475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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