View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_low_14 (Length: 388)
Name: NF11716_low_14
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 39620483 - 39620172
Alignment:
| Q |
18 |
acttcctcctgccaannnnnnnaattgttctatgttatcaatgtcgtcaagaaccagaagaacctttttcttgccaagcttgtgttttatttcacagatt |
117 |
Q |
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| T |
39620483 |
acttcctcctgccaaattttttaattgttctttgttatcaacgtcatcaagaaccaaaagaacctttttattgcccagcttttgctttatttctttgatt |
39620384 |
T |
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| Q |
118 |
cctttacttgtacttccaaactgggtttctgcctgctcgaacatctctgataaaagtgtcttctgtagatcttctaggccattgattttgttcgatttgt |
217 |
Q |
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| T |
39620383 |
cctttacttgtacttcccagatcggtatctggcttctcaaacatctctgataaaagtgtcttttgaagatcttctaggccattgattttgtttgatttct |
39620284 |
T |
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| Q |
218 |
ctctaacattggcaagaaaacttgcagcttcataatggtgcacgatcttgttatacaatgatgtggcaagttctgtcttccctattcctccaagtccata |
317 |
Q |
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| T |
39620283 |
ctctaacgttggcaagaaaacttgcagcttcaaattggtgcacaattttgttatacaatgatttggcaagttctgttttccctattccaccaagtccatg |
39620184 |
T |
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| Q |
318 |
tatgcccaacat |
329 |
Q |
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| T |
39620183 |
tatacccaacat |
39620172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 64 - 340
Target Start/End: Original strand, 39581523 - 39581798
Alignment:
| Q |
64 |
tcaagaaccagaagaacctttttcttgccaagcttgtgttttatttcacagattcctttacttgtacttccaaactgggtttctgcctgctcgaacatct |
163 |
Q |
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| T |
39581523 |
tcaagaaccaacagaacctttttccttccaagcttgtattttatttcatagattcctttacttat-cttcccagctcggtttctggctgctcaaacatct |
39581621 |
T |
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| Q |
164 |
ctgataaaagtgtcttctgtagatcttctaggccattgattttgttcgatttgtctctaacattggcaagaaaacttgcagcttcataatggtgcacgat |
263 |
Q |
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| T |
39581622 |
ctggtaaaagtgtctggtgtaaatcttctgggccgttgattttgtttgatttctctctaacattggcaataaaacttgcagcttcaaattggtgcacaat |
39581721 |
T |
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| Q |
264 |
cttgttatacaatgatgtggcaagttctgtcttccctattcctccaagtccatatatgcccaacatgcatacagtgt |
340 |
Q |
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| T |
39581722 |
tttgttatacaatgctttggcaagttctgtttttcctattccaccgagtccgcatatacccaacatacatatagtgt |
39581798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 365
Target Start/End: Complemental strand, 39628202 - 39628169
Alignment:
| Q |
332 |
atacagtgtgggagcaagttgtttcaaattgtct |
365 |
Q |
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| T |
39628202 |
atacagtgtgggagcaagttgtttcaaattgtct |
39628169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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