View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11716_low_16 (Length: 295)

Name: NF11716_low_16
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11716_low_16
NF11716_low_16
[»] chr7 (20 HSPs)
chr7 (18-120)||(46812311-46812413)
chr7 (18-118)||(2167767-2167867)
chr7 (17-120)||(33038534-33038637)
chr7 (18-119)||(40784640-40784741)
chr7 (18-120)||(38613758-38613860)
chr7 (18-120)||(47341418-47341520)
chr7 (22-120)||(8423009-8423107)
chr7 (22-120)||(35344018-35344116)
chr7 (18-120)||(23954099-23954201)
chr7 (18-120)||(27955663-27955764)
chr7 (120-190)||(36755373-36755443)
chr7 (120-190)||(36761170-36761240)
chr7 (120-172)||(46812229-46812281)
chr7 (142-190)||(46996337-46996385)
chr7 (246-282)||(36755500-36755536)
chr7 (246-282)||(36761297-36761333)
chr7 (47-120)||(46996436-46996512)
chr7 (153-190)||(33038436-33038473)
chr7 (246-282)||(46812140-46812176)
chr7 (48-120)||(48704494-48704566)
[»] chr4 (15 HSPs)
chr4 (18-120)||(27625084-27625186)
chr4 (22-120)||(35996361-35996459)
chr4 (18-120)||(44558220-44558322)
chr4 (22-117)||(2350242-2350337)
chr4 (18-120)||(4519662-4519764)
chr4 (27-120)||(51041661-51041755)
chr4 (120-190)||(27625216-27625286)
chr4 (22-120)||(44794488-44794586)
chr4 (22-120)||(10372404-10372502)
chr4 (26-120)||(10762883-10762977)
chr4 (120-190)||(44558120-44558190)
chr4 (50-120)||(2827724-2827794)
chr4 (142-190)||(2827845-2827893)
chr4 (246-282)||(27625342-27625378)
chr4 (246-282)||(44558028-44558064)
[»] chr1 (22 HSPs)
chr1 (18-120)||(6575460-6575562)
chr1 (18-120)||(18183678-18183780)
chr1 (18-120)||(35479700-35479802)
chr1 (18-120)||(42134773-42134875)
chr1 (25-120)||(45380711-45380806)
chr1 (128-190)||(35479600-35479662)
chr1 (125-190)||(6575597-6575662)
chr1 (29-120)||(44158088-44158179)
chr1 (26-118)||(47269186-47269278)
chr1 (18-120)||(46638541-46638638)
chr1 (22-98)||(27940906-27940982)
chr1 (142-190)||(31802074-31802122)
chr1 (142-190)||(33682858-33682906)
chr1 (18-120)||(31801926-31802023)
chr1 (153-195)||(36895141-36895183)
chr1 (154-190)||(46638442-46638478)
chr1 (18-120)||(36895245-36895342)
chr1 (246-282)||(6575718-6575754)
chr1 (142-190)||(18183579-18183627)
chr1 (63-95)||(33682973-33683005)
chr1 (18-58)||(33685040-33685080)
chr1 (142-190)||(44158230-44158278)
[»] chr8 (14 HSPs)
chr8 (18-120)||(32822655-32822757)
chr8 (29-120)||(8654802-8654893)
chr8 (19-120)||(42897501-42897602)
chr8 (18-120)||(38882523-38882625)
chr8 (18-107)||(462111-462200)
chr8 (63-120)||(37525755-37525812)
chr8 (29-93)||(1320906-1320970)
chr8 (128-190)||(32822795-32822857)
chr8 (148-190)||(31821856-31821898)
chr8 (18-120)||(33750118-33750215)
chr8 (246-282)||(32822914-32822950)
chr8 (142-190)||(33750019-33750067)
chr8 (70-120)||(31200880-31200930)
chr8 (18-120)||(31821701-31821798)
[»] chr2 (15 HSPs)
chr2 (22-120)||(39821-39919)
chr2 (18-113)||(42001903-42001998)
chr2 (25-120)||(15432626-15432721)
chr2 (18-110)||(25619957-25620049)
chr2 (22-120)||(15372797-15372895)
chr2 (18-120)||(29909396-29909493)
chr2 (42-120)||(37417596-37417674)
chr2 (142-190)||(29909297-29909345)
chr2 (18-120)||(39132-39229)
chr2 (63-120)||(41706869-41706926)
chr2 (142-188)||(39035-39081)
chr2 (142-190)||(91982-92030)
chr2 (53-120)||(92081-92148)
chr2 (18-120)||(42879609-42879712)
chr2 (142-195)||(42002055-42002108)
[»] chr6 (7 HSPs)
chr6 (22-120)||(4641653-4641751)
chr6 (29-120)||(30641063-30641152)
chr6 (26-120)||(29077630-29077724)
chr6 (24-120)||(2968425-2968521)
chr6 (26-120)||(29112602-29112696)
chr6 (120-165)||(30640989-30641034)
chr6 (250-282)||(30640889-30640921)
[»] chr5 (13 HSPs)
chr5 (18-120)||(35292115-35292217)
chr5 (18-121)||(32838235-32838338)
chr5 (18-120)||(18728336-18728433)
chr5 (18-120)||(35395623-35395720)
chr5 (18-120)||(38177820-38177922)
chr5 (18-120)||(38205044-38205146)
chr5 (18-120)||(32087807-32087904)
chr5 (142-190)||(33256840-33256888)
chr5 (18-120)||(33256692-33256789)
chr5 (63-120)||(43317801-43317858)
chr5 (142-190)||(35395771-35395819)
chr5 (142-190)||(18728237-18728285)
chr5 (142-190)||(32087955-32088003)
[»] chr3 (17 HSPs)
chr3 (18-120)||(33112914-33113016)
chr3 (18-120)||(2977058-2977160)
chr3 (18-120)||(18430005-18430107)
chr3 (18-120)||(24382619-24382721)
chr3 (26-120)||(41020731-41020825)
chr3 (24-120)||(48634181-48634277)
chr3 (29-120)||(33852409-33852500)
chr3 (42-120)||(23774465-23774543)
chr3 (18-120)||(45898111-45898208)
chr3 (18-99)||(31887201-31887282)
chr3 (29-120)||(45256953-45257043)
chr3 (47-120)||(23888507-23888580)
chr3 (154-195)||(45898007-45898048)
chr3 (142-190)||(31887081-31887129)
chr3 (18-100)||(1846079-1846161)
chr3 (142-190)||(33112815-33112863)
chr3 (142-190)||(33852311-33852359)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 46812413 - 46812311
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||| |||||||||| ||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  46812413 catacctcattcttcacatttcagtcagaaacatcaaaaacgaccttgacctttctccttcccactaaaactttctccattctcacccctccaaaatcat 46812314  T
Q  118 cat 120  Q
    |||    
T  46812313 cat 46812311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 2167767 - 2167867
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  2167767 catacctccttcctcacatttcaatcagaaacatcaaaaacgtctttgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcat 2167866  T
Q  118 c 118  Q
    |    
T  2167867 c 2167867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 33038637 - 33038534
Alignment:
Q  17 acatacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatca 116  Q
    |||||||||||||||||||| ||| |||||||||||||||||||  || ||||||| ||||||| |||||||||||||||||| | ||||||||||||||    
T  33038637 acatacctccttcttcacatttcactcagaaacatcaaaaacgtcattaacccttccccttcccgctaaaactttctccattcccacccctccaaaatca 33038538  T
Q  117 tcat 120  Q
    ||||    
T  33038537 tcat 33038534  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 40784640 - 40784741
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||| | |||||||| |||||  |  |||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  40784640 catacctccttcttcacatttcacttagaaacataaaaaatatcattgacccttctccttcccgctaaaactttctccattctcacccctccaaaatcat 40784739  T
Q  118 ca 119  Q
    ||    
T  40784740 ca 40784741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 38613758 - 38613860
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||| ||| |||||| ||| |||||||||||||||| ||  |||||||||||||||||| ||||||||||||| |||||| || ||||||||||||    
T  38613758 catacctcattcctcacatttcactcagaaacatcaaaaatgtcattgacccttctccttcccgctaaaactttctctattctcacctctccaaaatcat 38613857  T
Q  118 cat 120  Q
    |||    
T  38613858 cat 38613860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 47341520 - 47341418
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |  |||||  ||| |||| || |||||||||||| ||||||| |||||||||||||||    
T  47341520 catacctccttcttcacatttcagtgagaaacatcaaaaacatccttgacatttcacctttccgctaaaactttcttcattctcacccctccaaaatcat 47341421  T
Q  118 cat 120  Q
    |||    
T  47341420 cat 47341418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 8423107 - 8423009
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| ||  |||||||||||||||||    
T  8423107 cctccttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcatccctccaaaatcatcat 8423009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 35344116 - 35344018
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | | ||||||||||||||||| |  || || |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  35344116 cctccttcttcacattttactcagaaacatcaaaaacatccttaactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 35344018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 23954099 - 23954201
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| |||||| ||  ||| |||||| ||||||||  ||||| |||||||| ||  |||||||||||||||||||| || ||||||||||||    
T  23954099 catacctccttcctcacatttctttcataaacataaaaaacgtccttgactcttctcctacctgctaaaactttctccattctcacctctccaaaatcat 23954198  T
Q  118 cat 120  Q
    |||    
T  23954199 cat 23954201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 27955663 - 27955764
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| |||| | |||||||||||||| ||||||||  ||||||||||| |||||| || |||| ||| |||||||| || ||||||||||||    
T  27955663 catacctccttcctcacttttcagtcagaaacattaaaaacgtccttgacccttctgcttcccgcttaaaccttc-ccattctcacctctccaaaatcat 27955761  T
Q  118 cat 120  Q
    |||    
T  27955762 cat 27955764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 36755373 - 36755443
Alignment:
Q  120 tttcagtgttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||| |||||| | ||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  36755373 tttctgtgttcagttgtttcaaaaaggtaacacctttcctgttgtttatcaagttgatgtgttcgtattca 36755443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 36761170 - 36761240
Alignment:
Q  120 tttcagtgttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||| |||||| | ||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  36761170 tttctgtgttcagttgtttcaaaaaggtaacacctttcctgttgtttatcaagttgatgtgttcgtattca 36761240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 46812281 - 46812229
Alignment:
Q  120 tttcagtgttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaag 172  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  46812281 tttctgtgttcggctgtttaaaaaaggtaatgcctttcctgttgtttatcaag 46812229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 46996385 - 46996337
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  46996385 aaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtattca 46996337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 36755500 - 36755536
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36755500 accacatttatgtgatcgttgatgctttccttgttct 36755536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 36761297 - 36761333
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36761297 accacatttatgtgatcgttgatgctttccttgttct 36761333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 46996512 - 46996436
Alignment:
Q  47 aacatcaaaaacgtttttgacccttctccttcc---cactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||  ||||||||||| ||||    | ||||||||| ||||||| || ||||||||||||||||||    
T  46996512 aacatcaaaaacgtccttgacccttcttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 46996436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 33038473 - 33038436
Alignment:
Q  153 ctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  33038473 ctttcatgtagtttatcaagtttatgtgttcgtattca 33038436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 46812176 - 46812140
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    |||||||||||||||||||| || |||||||||||||    
T  46812176 accacatttatgtgatcgttaatgctttccttgttct 46812140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 48704494 - 48704566
Alignment:
Q  48 acatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||| |||| |||| || |||| |||||| ||||||| ||| ||||  ||||| |||||||||||||||    
T  48704494 acatcaaacacgtctttggcctttctacttcccgctaaaaccttcaccatcttcgcctctccaaaatcatcat 48704566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 27625084 - 27625186
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||||||| || ||||||||||| || ||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  27625084 catacctccttcttcagatttcagtcagaaaaataaaaaacgtcattgacccttctccttcccactaaaactttatccattctcacccctccaaaatcat 27625183  T
Q  118 cat 120  Q
    |||    
T  27625184 cat 27625186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 35996361 - 35996459
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  35996361 cctccttcttcacatttcagtcagaaacatcaaaaacatatttgactcttctccttcccgctaaaactttctccagtctcacccctccaaaatcatcat 35996459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 44558322 - 44558220
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  44558322 catacctccttctttacatttcagtcagaaaaatcaaaaacgtccttgacccttctccttcccactaaaactctatccattctcacccctccaaaatcat 44558223  T
Q  118 cat 120  Q
    |||    
T  44558222 cat 44558220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 2350337 - 2350242
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||| ||||| ||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2350337 cctccttcttcacatttcagttagaaacatcaaaaacatccttgactcttctccttcccactaaaactttctccattctcacccctccaaaatcat 2350242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 4519662 - 4519764
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| |||||| ||| ||||||||||||||||| |  ||||||||||| |||||| |||||||||||||||||||| || ||||||||||||    
T  4519662 catacctccttcctcacatttcactcagaaacatcaaaaacatccttgacccttcttcttcccgctaaaactttctccattctcacctctccaaaatcat 4519761  T
Q  118 cat 120  Q
    |||    
T  4519762 cat 4519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 51041755 - 51041661
Alignment:
Q  27 ttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctcctt-cccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||| ||| |||||||||||||||||||  ||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||    
T  51041755 ttcttcacatttcactcagaaacatcaaaaacgtcattgacccttctccttccccgctaaagctttctccattctcacccctccaaaatcatcat 51041661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 27625216 - 27625286
Alignment:
Q  120 tttcagtgttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27625216 tttctgtgttcggttgtttcaaaaaggtaacgtctttcctgttgtttgtcaagtttatgtgttcgtattca 27625286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 44794586 - 44794488
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | | |||||||||| |||||| | |||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  44794586 cctccttcttcacattttactcagaaacattaaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 44794488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 10372502 - 10372404
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | | | ||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  10372502 cctccttcttcacattttacttagaaacatcaaaaacatccttgactcttctccttcccgctaaaacattctccattgtcacccctccaaaatcatcat 10372404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 10762883 - 10762977
Alignment:
Q  26 cttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  10762883 cttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 10762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 44558190 - 44558120
Alignment:
Q  120 tttcagtgttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  44558190 tttctgtgttcggttgtttcaaaaaggtaacgtcttttctgttgtttatcaagtttatgtgttcgttttca 44558120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 2827724 - 2827794
Alignment:
Q  50 atcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||||  ||||||||||| |||| | ||||||||| ||||||| || ||||||||||||||||||    
T  2827724 atcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 2827794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 2827845 - 2827893
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  2827845 aaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtattca 2827893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 27625342 - 27625378
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  27625342 accacatttatgtgatccttgatgctttccttgttct 27625378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 44558064 - 44558028
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    |||||||||||||||| |||||| |||||||||||||    
T  44558064 accacatttatgtgattgttgatgctttccttgttct 44558028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 6575460 - 6575562
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  6575460 catacctccttcttcacatttcagttagaaaaataaaaaacgtccttgacccttctccttcccactaaaactttatccattctcacccctccaaaatcat 6575559  T
Q  118 cat 120  Q
    |||    
T  6575560 cat 6575562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 18183780 - 18183678
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| | |||| ||| |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  18183780 catacctccttccttacatttcactcagaaacatcaaaaacgtcattgacccttctccttcccgctaaaactttctccattctcacctctccaaaatcat 18183681  T
Q  118 cat 120  Q
    |||    
T  18183680 cat 18183678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 35479802 - 35479700
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||| |||||||||| || ||||||||||| || ||||||||  ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||    
T  35479802 catacatccttcttcatatttcagtcagaaaaataaaaaacgtccttgacccttctccttcccactaaaactttattcattctcgcctctccaaaatcat 35479703  T
Q  118 cat 120  Q
    |||    
T  35479702 cat 35479700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 42134773 - 42134875
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||| |||||||||| ||||||||||||||||||||| |  |||||| |||  ||| || |||||||||||||||||||| |||||||||||||||    
T  42134773 catacctctttcttcacatttcagtcagaaacatcaaaaacatccttgacctttcatctttccgctaaaactttctccattctcacccctccaaaatcat 42134872  T
Q  118 cat 120  Q
    |||    
T  42134873 cat 42134875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 45380806 - 45380711
Alignment:
Q  25 ccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||||| ||||||||||||||||||||| |  |||||| ||| | || || |||||||||||||||||||| ||||||||||||||||||    
T  45380806 ccttcttcacatttcagtcagaaacatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcatcat 45380711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 35479662 - 35479600
Alignment:
Q  128 ttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35479662 ttcggttgtttcaaaaaggtaacgcctttcctgttgtttatcaagtttatgtgttcgtattca 35479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 6575597 - 6575662
Alignment:
Q  125 gtgttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6575597 gtgttcggttgttttaaaaaggtaacgcttttcctgttgtttatcaagtttatgtgttcgtattca 6575662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 44158088 - 44158179
Alignment:
Q  29 cttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||| ||||||||||||||||||||| |  |||||| ||| |||| | ||||||||||||||||||||| ||| | ||||||||||||    
T  44158088 cttcacatttcagtcagaaacatcaaaaacatccttgacctttcacctttctactaaaactttctccattctcaccctttcaaaatcatcat 44158179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 47269278 - 47269186
Alignment:
Q  26 cttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatc 118  Q
    ||||||||||| | | |||||| |||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||    
T  47269278 cttcttcacattttactcagaaccatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatc 47269186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 46638638 - 46638541
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||| |||||||||||||| ||||     |||||||||||||| |||||||||||| |||  | ||||||||| ||||||| || |||||||||||||||    
T  46638638 cataactccttcttcacatttcag-----aacatcaaaaacgtctttgacccttcttcttttcgctaaaacttcctccattttcacccctccaaaatcat 46638544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 27940906 - 27940982
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccatt 98  Q
    ||||||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| ||||||| |||||||||    
T  27940906 cctccttcttcacattttactcagaaacatcaaaaacatcattgactcttctccttcccgctaaaacgttctccatt 27940982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 31802074 - 31802122
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  31802074 aaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtattca 31802122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 33682906 - 33682858
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  33682906 aaaggtaacgcctttcctattgtttatcaagtttctgtgttcgtattca 33682858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 31801926 - 31802023
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||| ||||||||||| ||||     ||||||||||||||  ||||||||||| |||| | ||||||||| ||||| | || | |||||||||||||    
T  31801926 catacctacttcttcacatttcag-----aacatcaaaaacgtcattgacccttcttcttctcgctaaaacttcctccactttcactcctccaaaatcat 31802020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 36895183 - 36895141
Alignment:
Q  153 ctttcctgttgtttatcaagtttatgtgttcgtattcatccta 195  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  36895183 ctttcctgttgtttatcaagtttttgtgttcgtattcacccta 36895141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 46638478 - 46638442
Alignment:
Q  154 tttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||||||||||||||| ||||||||||||||    
T  46638478 tttcctgttgtttatcaagtttttgtgttcgtattca 46638442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 36895342 - 36895245
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| |||      ||||||||||||||  |||| |||||| |||| | ||||||||  ||||||| ||  ||||||||||||||    
T  36895342 catacctccttcttcacatttcac-----aacatcaaaaacgtcattgatccttcttcttctcgctaaaactacctccattttcatccctccaaaatcat 36895248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 6575718 - 6575754
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    |||||| |||||||||||||||| |||||||||||||    
T  6575718 accacaattatgtgatcgttgatgctttccttgttct 6575754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 18183627 - 18183579
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||| | ||||||||||||| ||||||||||||||    
T  18183627 aaaggtaacacctttcctctagtttatcaagtttctgtgttcgtattca 18183579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 33683005 - 33682973
Alignment:
Q  63 ttgacccttctccttcccactaaaactttctcc 95  Q
    |||||||||||||||||| ||||||||||||||    
T  33683005 ttgacccttctccttcccgctaaaactttctcc 33682973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33685080 - 33685040
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaac 58  Q
    |||| |||||||||||||| |||||||||||||||| ||||    
T  33685080 catatctccttcttcacatttcagtcagaaacatcataaac 33685040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 44158230 - 44158278
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||| |||||  ||||||||||||| || ||||||||||||||    
T  44158230 aaaggtaacgcctttcaggttgtttatcaagattttgtgttcgtattca 44158278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 32822655 - 32822757
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||||||||| || ||||||||  ||||||||||||||||||||||||||||| | |||||||||| || |||||||||    
T  32822655 catacctccttcttcacatttcagtcagaaaaataaaaaacgtcattgacccttctccttcccactaaaactttattcattctcgcctcttcaaaatcat 32822754  T
Q  118 cat 120  Q
    |||    
T  32822755 cat 32822757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 8654802 - 8654893
Alignment:
Q  29 cttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||| ||||||||||||||||||||| |  ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  8654802 cttcacatttcagtcagaaacatcaaaaacatcattgactcttctccttcccgctaaaactttctccattctcacccctccaaaatcatcat 8654893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 42897602 - 42897501
Alignment:
Q  19 atacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatc 118  Q
    |||| |||||| |||||| ||  |||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||| || |||||||| ||||    
T  42897602 atacttccttcctcacatttctctcagaaacataaaaaacgttcttgactcttctccttcccgctaaaactttctccattctcaccactccaaaaccatc 42897503  T
Q  119 at 120  Q
    ||    
T  42897502 at 42897501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 38882625 - 38882523
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||  ||| | ||| |||||||||| ||||||||  |||||||||||||||||||||||| | ||||||||| || || ||||||||||||    
T  38882625 catacctccttccccacttttcactcagaaacataaaaaacgtcattgacccttctccttcccactaaagccttctccattttcaccgctccaaaatcat 38882526  T
Q  118 cat 120  Q
    |||    
T  38882525 cat 38882523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 462200 - 462111
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccct 107  Q
    ||||||||||||||| ||  ||| |||||||||| || |||||  |||||||||||||||||| |||||||||||||||||||| |||||    
T  462200 catacctccttcttcgcagttcactcagaaacataaagaacgtcattgacccttctccttcccgctaaaactttctccattctcacccct 462111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 37525812 - 37525755
Alignment:
Q  63 ttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  37525812 ttgactcttctccttcccgctaaaactttcttcattctcacccctccaaaatcatcat 37525755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 1320906 - 1320970
Alignment:
Q  29 cttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttct 93  Q
    |||||||| ||||||||||||||||||||| | ||||||| ||| |||| |||||||||||||||    
T  1320906 cttcacatttcagtcagaaacatcaaaaacatctttgacctttcacctttccactaaaactttct 1320970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 32822795 - 32822857
Alignment:
Q  128 ttcggctgtttaaaaaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    ||||| ||||| ||||||||||||  |||||| ||||||||||||||||||||| ||||||||    
T  32822795 ttcggttgtttcaaaaaggtaacgcttttcctattgtttatcaagtttatgtgtccgtattca 32822857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 31821856 - 31821898
Alignment:
Q  148 aacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  31821856 aacgcctttcctgttgtttatcaagtttttgtgttcgtattca 31821898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 33750215 - 33750118
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| || |     ||||||||||||||  ||||||||| | |||| | ||||||||| || |||| || |||||||||||||||    
T  33750215 catacctccttcttcacatttctg-----aacatcaaaaacgtccttgaccctttttcttctcgctaaaacttccttcattttcacccctccaaaatcat 33750121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 32822914 - 32822950
Alignment:
Q  246 accacatttatgtgatcgttgattctttccttgttct 282  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32822914 accacatttatgtgatcgttgatgctttccttgttct 32822950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 33750067 - 33750019
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||||||||||||||||||| |||||| |||||||    
T  33750067 aaaggtaacacctttcctgttgtttatcaagtttttgtgtttgtattca 33750019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 31200930 - 31200880
Alignment:
Q  70 ttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||| ||||| ||||||| ||||||||| || ||||||||||||||||||    
T  31200930 ttctctttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 31200880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 31821701 - 31821798
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||| ||||||||||||| ||||     ||||| ||||| ||  ||||||||||| |||  | ||||||||| ||||||| || |||||||||||||||    
T  31821701 catacatccttcttcacatttcag-----aacataaaaaatgtccttgacccttcttcttatcgctaaaacttcctccattttcacccctccaaaatcat 31821795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 39821 - 39919
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | ||||||||||||||||||| |  ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  39821 cctccttcttcacattttagtcagaaacatcaaaaacatccttgactcttctccttcccgctaaaactttctccattctcacccctccaaaatcatcat 39919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 42001903 - 42001998
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaa 113  Q
    ||||||||||||||||||| ||||||||||||||||||||| |  |||| ||||||||||||| ||||||||||| ||||| || |||||||||||    
T  42001903 catacctccttcttcacatttcagtcagaaacatcaaaaacatcattgatccttctccttcccgctaaaactttccccattatcacccctccaaaa 42001998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 15432626 - 15432721
Alignment:
Q  25 ccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||||| ||||||||||||||||||||| | |||| || | ||||||||| || |||||||| |||||||| ||||||||||||||||||    
T  15432626 ccttcttcacatttcagtcagaaacatcaaaaacatctttggccttcctccttcccgctcaaactttcaccattctcacccctccaaaatcatcat 15432721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 25619957 - 25620049
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctcca 110  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||  |||||||||||||||  |  ||||||||||||||||||| ||||||||    
T  25619957 catacctccttcttcacatttcactcagaaacataaaaaacgtccttgacccttctccttttcgataaaactttctccattctcacccctcca 25620049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 15372797 - 15372895
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| ||  |||||||||||||||||    
T  15372797 cctccttcttcacattttactcagaaacatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcaaccctccaaaatcatcat 15372895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 29909493 - 29909396
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||     ||||||||||||||  ||||||||||| |||||| ||||||||| ||||||| || |||||||||||| ||    
T  29909493 catacctccttcttcacatttcag-----aacatcaaaaacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaattat 29909399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 37417596 - 37417674
Alignment:
Q  42 tcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||||| ||||||||||| || |||||||| ||||||    
T  37417596 tcagaaacatcaaaaacgtccttgactcttctccttcccgctaaaactgtctccattctcacctctccaaaaccatcat 37417674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 29909345 - 29909297
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29909345 aaaggtaacgtctttcctgttgtttatcaagtttctgtgttcgtattca 29909297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 39229 - 39132
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||     ||||| ||||||||  ||||||||||| |||| | |||| |||| ||||||| || |||||||||||||||    
T  39229 catacctccttcttcacatttcag-----aacataaaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcat 39135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 41706869 - 41706926
Alignment:
Q  63 ttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  41706869 ttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 41706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 39081 - 39035
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtatt 188  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  39081 aaaggtaacacctttcctgttgtttatcaagtttttgtgttcgtatt 39035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 92030 - 91982
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  |||| |||||||||||||||||| ||||||||||||||    
T  92030 aaaggtaacaccttttctgttgtttatcaagtttttgtgttcgtattca 91982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 92148 - 92081
Alignment:
Q  53 aaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||  ||||||||||| |||| | |||| |||| ||||||| || ||||||||||||||||||    
T  92148 aaaaacgtccttgacccttcttcttctcgctaatacttcctccattttcacccctccaaaatcatcat 92081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 42879609 - 42879712
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaa-cgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatca 116  Q
    ||||| |||||| |||||| ||  |||||||||| ||||| |||  ||||| |||||| |||   |||||||||||||||||||| || |||||||| ||    
T  42879609 catacttccttcctcacatttctctcagaaacataaaaaaacgtccttgactcttctctttcttgctaaaactttctccattctcacctctccaaaacca 42879708  T
Q  117 tcat 120  Q
    ||||    
T  42879709 tcat 42879712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 42002055 - 42002108
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattcatccta 195  Q
    |||||||||  ||||||||||||||||||||||   ||||||||||||| ||||    
T  42002055 aaaggtaacacctttcctgttgtttatcaagttcccgtgttcgtattcacccta 42002108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 4641653 - 4641751
Alignment:
Q  22 cctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||||| | | ||||||||||||||||| | |||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  4641653 cctccttcttcacattttactcagaaacatcaaaaacatctttgactcttctccttcccgctaaaacgttctccattgtcgcccctccaaaatcatcat 4641751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 30641152 - 30641063
Alignment:
Q  29 cttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  30641152 cttcacatataagtgagaaacatcaaaaacgtccttgacccttctccttcccactaaaactt--tccgttctcgcccctccaaaatcatcat 30641063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 29077630 - 29077724
Alignment:
Q  26 cttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  29077630 cttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattttcacccctccaaaatcatcat 29077724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 2968425 - 2968521
Alignment:
Q  24 tccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||||| | | ||||||| ||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  2968425 tccttcttcacattttactcagaaaaatcaaaaacatcattgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 2968521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 29112602 - 29112696
Alignment:
Q  26 cttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||| | | | ||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  29112602 cttcttcacattttacttagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 29112696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 30641034 - 30640989
Alignment:
Q  120 tttcagtgttcggctgtttaaaaaaggtaacgtctttcctgttgtt 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  30641034 tttcagtgttctgctgtttaaaaaaggtaacgtctttcctgttgtt 30640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 30640921 - 30640889
Alignment:
Q  250 catttatgtgatcgttgattctttccttgttct 282  Q
    ||||||||||||||||||| |||||||||||||    
T  30640921 catttatgtgatcgttgatgctttccttgttct 30640889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 35292217 - 35292115
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| ||||||  || ||||||||||||||||| |  |||| ||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  35292217 catacctccttcctcacattccactcagaaacatcaaaaacatccttgatccttctccttccccctaaaactttctccattctcacctctccaaaatcat 35292118  T
Q  118 cat 120  Q
    |||    
T  35292117 cat 35292115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 32838338 - 32838235
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||| |||||| |||||| ||  |||||||||| ||||||||  ||||| |||||||||||| |||||||||||||||||||| || |||||||| |||    
T  32838338 catacttccttcctcacatttctctcagaaacataaaaaacgtcattgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccat 32838239  T
Q  118 catt 121  Q
    ||||    
T  32838238 catt 32838235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 18728433 - 18728336
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||     |||||||||||||| |||||||||||| |||| | ||||||||| ||||||| || |||||||||||||||    
T  18728433 catacctccttcttcacatttcag-----aacatcaaaaacgtctttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcat 18728339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 35395623 - 35395720
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||     ||||||||| ||||  ||||||||||| |||||| ||||||||| ||||||| || |||||||||||||||    
T  35395623 catacctccttcttcacatttcag-----aacatcaaacacgtccttgacccttcttcttcccgctaaaacttcctccattttcacccctccaaaatcat 35395717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 38177922 - 38177820
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||| |||||| |||||| ||  |||||||||| ||||||||  ||||| |||||||||||  |||||||||||||||||||| || |||||||| |||    
T  38177922 catacttccttcctcacatttctctcagaaacataaaaaacgtccttgactcttctccttcctgctaaaactttctccattctcacctctccaaaaccat 38177823  T
Q  118 cat 120  Q
    |||    
T  38177822 cat 38177820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 38205146 - 38205044
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||| |||||| |||||| ||  |||||||||| ||||||||  ||||| |||||||||||  |||||||||||||||||||| || |||||||| |||    
T  38205146 catacttccttcctcacatttctctcagaaacataaaaaacgtccttgactcttctccttcctgctaaaactttctccattctcacctctccaaaaccat 38205047  T
Q  118 cat 120  Q
    |||    
T  38205046 cat 38205044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 32087807 - 32087904
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||     ||||||||||||||  ||||||||||| |||| | ||||||||| |||||||  | |||||||||||||||    
T  32087807 catacctccttcttcacatttcag-----aacatcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccatttccacccctccaaaatcat 32087901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 33256840 - 33256888
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  33256840 aaaggtaacgcctttcctgttgtttatcaagtttttgtgttcgtattca 33256888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 33256692 - 33256789
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||||||||||  |||     |||||||||||||   ||||| ||||| |||| ||||||||||| ||||||| || |||||||||||||||    
T  33256692 catacctccttcttcacattccag-----aacatcaaaaacgaccttgacacttcttcttctcactaaaacttcctccattttcacccctccaaaatcat 33256786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 43317858 - 43317801
Alignment:
Q  63 ttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||||||| ||| |||||||||||||||||||| || | |||||||||||||    
T  43317858 ttgacccttctcctcccccctaaaactttctccattctcacctccccaaaatcatcat 43317801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 35395771 - 35395819
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  35395771 aaaggtaacgcctttcttgttgtttatcaagtttctgtgttcgtattca 35395819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 18728285 - 18728237
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||| | ||||||||||||||||||||||| |||||| |||||||    
T  18728285 aaaggtaatgcctttcctgttgtttatcaagtttttgtgtttgtattca 18728237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 32087955 - 32088003
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||||||||||||||||||| |||||| |||||||    
T  32087955 aaaggtaacacctttcctgttgtttatcaagtttttgtgttagtattca 32088003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 33113016 - 33112914
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| |||||| ||| ||| |||||| |||||||| | ||||||||||| ||||| |||||||||||||||||||| || ||||||||||||    
T  33113016 catacctccttcctcacatttcactcataaacataaaaaacgtctctgacccttctcattcccgctaaaactttctccattctcacctctccaaaatcat 33112917  T
Q  118 cat 120  Q
    |||    
T  33112916 cat 33112914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 2977160 - 2977058
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||||||| |||||| ||| |||||||||||||||| |||  |||||||||| |||||| | ||||| |||||||||||| || ||||||||||||    
T  2977160 catacctccttcctcacatttcactcagaaacatcaaaaatgttcgtgacccttcttcttcccgcaaaaaccttctccattctcacctctccaaaatcat 2977061  T
Q  118 cat 120  Q
    |||    
T  2977060 cat 2977058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 18430107 - 18430005
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    |||||||| |||||||||| |||||||||| |||||||||| |  |||||| ||| | || || |||||||||||||||||||| |||||||||||||||    
T  18430107 catacctcattcttcacatttcagtcagaagcatcaaaaacatccttgacctttcacatttccgctaaaactttctccattctcacccctccaaaatcat 18430008  T
Q  118 cat 120  Q
    |||    
T  18430007 cat 18430005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 24382721 - 24382619
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||  ||| | |||||||||||| ||||||| ||||||||| || ||||| |||||||||    
T  24382721 catacctccttcttcacatttcactcagaaacataaaaaacgtcattgtctcttctccttcccgctaaaacattctccattttcaccccttcaaaatcat 24382622  T
Q  118 cat 120  Q
    |||    
T  24382621 cat 24382619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 41020825 - 41020731
Alignment:
Q  26 cttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    ||||||||||| | | ||||||||||||||||| |  ||||| |||||||||||| ||||||| ||||||||| || ||||||||||||||||||    
T  41020825 cttcttcacattttactcagaaacatcaaaaacatccttgactcttctccttcccgctaaaacgttctccattgtcacccctccaaaatcatcat 41020731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 48634181 - 48634277
Alignment:
Q  24 tccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||| |||||| ||  ||| |||||||||||||||  ||||| |||||||||||| |||||||||||||||||||| || |||||||| ||||||    
T  48634181 tccttcctcacatttctctcaaaaacatcaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcat 48634277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 33852500 - 33852409
Alignment:
Q  29 cttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||| |||||||||||||| |||||| |  |||||  ||| |||| || |||||||||||||||||||| ||||||||||||||||||    
T  33852500 cttcacatttcagtcagaaacataaaaaacatccttgacttttcacctttccgctaaaactttctccattctcacccctccaaaatcatcat 33852409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 23774465 - 23774543
Alignment:
Q  42 tcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||| ||||||||  ||||| |||||||||||| |||||||||||||||||||| || |||||||| ||||||    
T  23774465 tcagaaacataaaaaacgtccttgactcttctccttcccgctaaaactttctccattctcacctctccaaaaccatcat 23774543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 45898208 - 45898111
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcat 117  Q
    ||||||||||||||||||| ||||     ||||||||||||||  ||||||||||| |||| | ||||||||| ||||||| || ||||||||||| |||    
T  45898208 catacctccttcttcacatttcag-----aacatcaaaaacgtccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaaacat 45898114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 31887282 - 31887201
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattc 99  Q
    |||||||||||| |||||| ||| ||| ||| |||||||||||  |||| | ||||||||||| ||||||||||||||||||    
T  31887282 catacctccttcctcacatttcactcaaaaatatcaaaaacgtcattgaacattctccttcccgctaaaactttctccattc 31887201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 45257043 - 45256953
Alignment:
Q  29 cttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||| | ||||| ||||||||||||| |  |||||| ||  |||| || |||||||||||||||||||| ||||||||||||||||||    
T  45257043 cttcacattttagtca-aaacatcaaaaacatccttgaccttttacctttccgctaaaactttctccattctcacccctccaaaatcatcat 45256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 23888580 - 23888507
Alignment:
Q  47 aacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattctcgcccctccaaaatcatcat 120  Q
    |||||||||||||   ||||||||||| |||| | ||||||||| ||||||| || ||||||||||||||||||    
T  23888580 aacatcaaaaacgaccttgacccttcttcttctcgctaaaacttcctccattttcacccctccaaaatcatcat 23888507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 45898048 - 45898007
Alignment:
Q  154 tttcctgttgtttatcaagtttatgtgttcgtattcatccta 195  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  45898048 tttcctgttgtttatcaagtttttgtgttcgtattcacccta 45898007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 31887129 - 31887081
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||| | ||||||||||||||||||||||||||||    
T  31887129 aaaggtaacacctttcctctagtttatcaagtttatgtgttcgtattca 31887081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 1846079 - 1846161
Alignment:
Q  18 catacctccttcttcacatatcagtcagaaacatcaaaaacgtttttgacccttctccttcccactaaaactttctccattct 100  Q
    |||| ||| ||| |||||| |||||| ||||||||||    || ||||||||||||| ||||| |||||| ||||||||||||    
T  1846079 catatctcattcctcacatttcagtctgaaacatcaacttagtctttgacccttctctttcccgctaaaattttctccattct 1846161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 33112863 - 33112815
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||  ||||||| | ||||||||||||| ||||||||||||||    
T  33112863 aaaggtaacacctttcctctagtttatcaagtttctgtgttcgtattca 33112815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 33852359 - 33852311
Alignment:
Q  142 aaaggtaacgtctttcctgttgtttatcaagtttatgtgttcgtattca 190  Q
    |||||||||| |||||  ||||||||||||| || ||||||||||||||    
T  33852359 aaaggtaacgcctttcaggttgtttatcaagattttgtgttcgtattca 33852311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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