View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_low_18 (Length: 284)
Name: NF11716_low_18
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 457111 - 457277
Alignment:
| Q |
4 |
gttactaaggttatcatttatcaaggagatcgattgggtggattcggtctagagataggtaaataaaacaaaactgaactcatgaaaatagcttatgacc |
103 |
Q |
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| T |
457111 |
gttactaaggttatcatttatcaaggagatcgattgggtggattcggtctagagataggtaaataaaacaaaactgaactcatgaaaatagcttatgacc |
457210 |
T |
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| Q |
104 |
atgccataagccattttcacaacttctctatactagtatctcaaacgtttatgttaatgcgaaagtt |
170 |
Q |
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| T |
457211 |
atgccataagccattttcacaacgtctctatactagtatctcaaacgtttatgttaatgcgaaagtt |
457277 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 457336 - 457375
Alignment:
| Q |
229 |
tgttaagaaagaaacacaatttgatttgatataaccttac |
268 |
Q |
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| T |
457336 |
tgttaaaaaagaaacacaatttgatttgatataaccttac |
457375 |
T |
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