View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_low_20 (Length: 268)
Name: NF11716_low_20
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 52873574 - 52873709
Alignment:
| Q |
1 |
ccccacccatacatcccattcatttcactcaaacgtatttcatttcgcatattatattgtccatctcagcaccaaatcatatttatcctcattttcatgc |
100 |
Q |
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| T |
52873574 |
ccccacccatacatcccattcatttcactcaaacgtatttcatttcgcatattatattgtccatctcagcaccaaatcatatttatcctcattttcatgc |
52873673 |
T |
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| Q |
101 |
cctcgttttcttccaaactattaattctccatgtta |
136 |
Q |
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| T |
52873674 |
cctcgttttcttccaaactattaattctccatgtta |
52873709 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 52873752 - 52873823
Alignment:
| Q |
132 |
tgttagcatttctatttgctaattggaaagtaccttacattccatgcaatttgacttgttatatatatgttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52873752 |
tgttagcatttctatttgctaattggaaagtaccttacattccatgcaatttgacttgttatatatatgttc |
52873823 |
T |
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