View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11716_low_26 (Length: 240)

Name: NF11716_low_26
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11716_low_26
NF11716_low_26
[»] chr3 (9 HSPs)
chr3 (18-240)||(22632474-22632696)
chr3 (18-240)||(22631078-22631300)
chr3 (18-240)||(22468557-22468779)
chr3 (18-239)||(22431760-22431978)
chr3 (18-240)||(22368521-22368740)
chr3 (29-240)||(22358625-22358836)
chr3 (29-240)||(22636126-22636337)
chr3 (37-240)||(22443370-22443570)
chr3 (18-210)||(22437243-22437435)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22632474 - 22632696
Alignment:
Q  18 gatctttttcacttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtc 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  22632474 gatctttttcacttgtttcttttatttctctaattctggatttgatgttctgaatcttgtcagcaatttggagacgaagaatcttagttttcaccaagtc 22632573  T
Q  118 aacagctccagcagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagc 217  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  22632574 aatagctccagtagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagc 22632673  T
Q  218 tgcttgatcatgtctttgatttt 240  Q
    |||||||||||||||||||||||    
T  22632674 tgcttgatcatgtctttgatttt 22632696  T

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Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22631078 - 22631300
Alignment:
Q  18 gatctttttcacttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtc 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22631078 gatctttttcacttgtttcttttatttctctaatttgggatttgatgttctgaatcttgtaagcaatttggagacgaagaatcttagttttcaccaagtc 22631177  T
Q  118 aacagctccagcagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagc 217  Q
    ||| ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22631178 aacggctccagcagcacatccaggatcaggagcatgttgttcctcatggaagatataatcatcaatgacatcttccatgtggaaagatgcttctatcagc 22631277  T
Q  218 tgcttgatcatgtctttgatttt 240  Q
    |||||||||||||||||||||||    
T  22631278 tgcttgatcatgtctttgatttt 22631300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22468557 - 22468779
Alignment:
Q  18 gatctttttcacttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtc 117  Q
    |||||||| |||||||||||||||||||||| |||||||| |||||||| |||||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  22468557 gatcttttgcacttgtttcttttatttctctgattcgggacttgatgttctgaatcttgtaagttatttggagacgaaggatcttagttttcaccaagtc 22468656  T
Q  118 aacagctccagcagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagc 217  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||  |||||||||| ||||||    
T  22468657 aacagcaccagcagcacatccaggatcagaagattgttgttcctcaagtaagatataatcatcaaccacatcttctatgtgataagatgcttctatcagc 22468756  T
Q  218 tgcttgatcatgtctttgatttt 240  Q
    |||||||||||||||||||||||    
T  22468757 tgcttgatcatgtctttgatttt 22468779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 22431760 - 22431978
Alignment:
Q  18 gatctttttcacttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtc 117  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| | ||||||    
T  22431760 gatctttttcacttgtatcttttatttcactaattcgggatttgatgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtc 22431859  T
Q  118 aacagctccagcagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagc 217  Q
    || |   |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||    
T  22431860 aaga---ccagcagcgcatccaggatcagaagattgttgttcttcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagc 22431956  T
Q  218 tgcttgatcatgtctttgattt 239  Q
    || |||||| |  |||||||||    
T  22431957 tgtttgatctttgctttgattt 22431978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22368521 - 22368740
Alignment:
Q  18 gatctttttcacttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtc 117  Q
    |||| ||||||||||||||||||||||| |||||| |||| |||||||| |||||||| ||||||||||||||||| ||  |  ||||||| | ||||||    
T  22368521 gatccttttcacttgtttcttttatttccctaatttgggaattgatgttctgaatcttataagcaatttggagacgtagttttgtagttttgagcaagtc 22368620  T
Q  118 aacagctccagcagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagc 217  Q
    ||||||   ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  22368621 aacagc---agcagcacatccaggttcagaagattgatgttcctcaaggaagatataatcatcaatgacatcttctatgtgaaaagatgtttctatcagc 22368717  T
Q  218 tgcttgatcatgtctttgatttt 240  Q
    |||||  ||||||||||||||||    
T  22368718 tgcttcgtcatgtctttgatttt 22368740  T

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Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 22358625 - 22358836
Alignment:
Q  29 cttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtcaacagctccag 128  Q
    ||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||| | |  | ||||||| ||  |||    | | ||||    
T  22358625 cttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgacacagtttgtaacaccag 22358724  T
Q  129 cagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagctgcttgatcat 228  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  22358725 cagcacatccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttctatgtgaaaagatgcttctatcagctgcttgatcat 22358824  T
Q  229 gtctttgatttt 240  Q
    ||||||||||||    
T  22358825 gtctttgatttt 22358836  T

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Target: chr3; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 22636126 - 22636337
Alignment:
Q  29 cttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtcaacagctccag 128  Q
    ||||| || |||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||| | |  | ||||||| ||  |||    |||  |||    
T  22636126 cttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgacacagtttgtagcaacag 22636225  T
Q  129 cagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagctgcttgatcat 228  Q
    ||||||| |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  22636226 cagcacaaccaggatcaggagcatgttgttcctcaagaaagatataatcatcaatgacatcttcaatgtgaaaagatgcttctatcagctgcttgatcat 22636325  T
Q  229 gtctttgatttt 240  Q
    ||||||||||||    
T  22636326 gtctttgatttt 22636337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 22443370 - 22443570
Alignment:
Q  37 ttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtcaacagctccagcagcacat 136  Q
    |||||||||||||||||| || |||||||| ||||||||    || |||||||||||||||||||||||||| | |||||||| |   ||||||||||||    
T  22443370 ttttatttctctaattcgagaattgatgttctgaatcttaactgctatttggagacgaagaatcttagttttgatcaagtcaaga---ccagcagcacat 22443466  T
Q  137 ccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttcaatcagctgcttgatcatgtctttga 236  Q
    ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| |||| ||| ||||||||  ||||||    
T  22443467 ccaagatcagaagattgatgttcttcaaggaagatataatcatcaatgacatcttctatatgaaaagatgcttctatcaactgtttgatcattgctttga 22443566  T
Q  237 tttt 240  Q
    ||||    
T  22443567 tttt 22443570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 22437243 - 22437435
Alignment:
Q  18 gatctttttcacttgtttcttttatttctctaattcgggatttgatgttttgaatcttctaagcaatttggagacgaagaatcttagttttcaccaagtc 117  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||| |||||| | || || |||||||||||  ||  | ||||||| ||  |||     
T  22437243 gatctttttcacttgtatcttttatttcactcattcgggatttgatgttctgaatcgtgtaggctatttggagacggtgagccatagttttgacacagtt 22437342  T
Q  118 aacagctccagcagcacatccaggatcagaagattgttgttcctcaagaaagatataatcatcaatgacatcttccatgtggaaagatgcttc 210  Q
        || ||||| |||||||||||||||| || ||||||||||||| | |||||||||||||||||||||||||| ||||  |||||||||||    
T  22437343 tgtggcaccagcggcacatccaggatcaggagcttgttgttcctcatggaagatataatcatcaatgacatcttctatgtcaaaagatgcttc 22437435  T

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