View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_low_28 (Length: 206)
Name: NF11716_low_28
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 50915485 - 50915350
Alignment:
| Q |
60 |
gaatataacaatataataa---cgataaaacacacatcatgatcatgggtcaaactagaaagtcactcnnnnnnnnnnnncacataaaagcataataaat |
156 |
Q |
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| T |
50915485 |
gaatataacaatataataataacgataaaacacacatcatgatcatgggtcaaactagaaagtcactcaaaaaacaaaaacacataaaagcataataaat |
50915386 |
T |
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| Q |
157 |
ctacattgcagccaagtttcattcattcaaatgccc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50915385 |
ctacattgcagccaagtttcattcattcaaatgccc |
50915350 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 37466262 - 37466311
Alignment:
| Q |
143 |
aaagcataataaatctacattgcagccaagtttcattcattcaaatgccc |
192 |
Q |
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||||||||||||||| | |||||| |||| ||| |||||||||||||||| |
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| T |
37466262 |
aaagcataataaatccaaattgcacccaaatttaattcattcaaatgccc |
37466311 |
T |
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