View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11716_low_7 (Length: 482)
Name: NF11716_low_7
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 30363647 - 30363198
Alignment:
| Q |
12 |
tgtcattttttgtatttacataacaattttttgtattcacaaatcgattctatatctttcagaattgtaccactaagaaagaggatgcaccatgctgcga |
111 |
Q |
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| T |
30363647 |
tgtcattttttgtatttacataacaattttttgtattcacaaatcgaatctatatctttcagaattctaccactaagaaagaggatgcaccatgctgcga |
30363548 |
T |
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| Q |
112 |
ggccgaagaaaacagttcaacttctcttgaggtaataagtgcggtaactttggtgtatcatctatctatgtttcctagtttctattactagtctcataac |
211 |
Q |
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| T |
30363547 |
ggccgaagaaaacagttcaacttctcttgaggtaataagcgcggtaattttggtgtatcatctatctatgtttcctagtttttattactattctcataac |
30363448 |
T |
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| Q |
212 |
atctatctatctatc----aggatggtgttggtaagaaaatgagtaaaggggagatcttaaacacagcaacatccacaaggggatcatctgttgaagtag |
307 |
Q |
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| T |
30363447 |
atctatctatctatctatcaggatggtgttggtaagaaaatgagtaaaggggagatcttaaacacagcaacatccacaaggggagcatctgttgaagtag |
30363348 |
T |
|
| Q |
308 |
gaaaagatgcttgcacaccaaaaccagcattgcgaaaaagtgtcaatgccccttccactatttctaagaagcaacagaactctaagaaggtatccacaaa |
407 |
Q |
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| T |
30363347 |
gaaaagatgcttgcacaccaaaaccagcattgcgaaaaagtgtcaatgccacttccactaattctaagaagcaacagaactctaagaaggtatccacaaa |
30363248 |
T |
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| Q |
408 |
taccaaaactcggttacaatcaggagccacgaagagcgctgcagggactc |
457 |
Q |
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| T |
30363247 |
taccaaaactcggttacaatcaggagcctcgaagagcgctgcagggactc |
30363198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30363687 - 30363647
Alignment:
| Q |
1 |
gtaattagtggtgtcattttttgtatttacataacaatttt |
41 |
Q |
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| T |
30363687 |
gtaattagtggtgtcattttttgtatttacataacaatttt |
30363647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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