View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11716_low_8 (Length: 479)
Name: NF11716_low_8
Description: NF11716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11716_low_8 |
 | |
|
| [»] scaffold1215 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 27632965 - 27632511
Alignment:
| Q |
11 |
cataggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttagggg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27632965 |
cataggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtgctgcgtgcaataaaggcttagggg |
27632866 |
T |
|
| Q |
111 |
aggatgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632865 |
aggatgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgctt |
27632766 |
T |
|
| Q |
211 |
agtttctgcatagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632765 |
agtttctgcatagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaa |
27632666 |
T |
|
| Q |
311 |
acggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27632665 |
acggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaattttgccagcgtc |
27632566 |
T |
|
| Q |
411 |
tagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagat |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27632565 |
tagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagat |
27632511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 34517749 - 34517303
Alignment:
| Q |
19 |
ttgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34517749 |
ttgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcttgcgtgcaataaaggcttaggggaggatgca |
34517650 |
T |
|
| Q |
119 |
atcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517649 |
atcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctg |
34517550 |
T |
|
| Q |
219 |
catagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517549 |
catagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtc |
34517450 |
T |
|
| Q |
319 |
tcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctagggaca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34517449 |
tcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaattttgccagcgtctagggaca |
34517350 |
T |
|
| Q |
419 |
atgtgtatcttccaagcttgaatgatatgctctcagatgaagaagat |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34517349 |
atgtgtatcttccaagcttgaatgatatgctctcagatgaagaagat |
34517303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 34506154 - 34505716
Alignment:
| Q |
11 |
cataggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttagggg |
110 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||| |||| | ||| |||||||||||||||||||||||||||||||| ||| || || ||||||||| |
|
|
| T |
34506154 |
cataggtattgtacttgattatatttgaaatttgatatcgaaatgaatgcttcactgttcctatatcagatttgtcctgtgtgtgatgaaagcttagggg |
34506055 |
T |
|
| Q |
111 |
aggatgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgctt |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
34506054 |
aggatgcaatcaggatggtgaagaactcaagcttcccaatctcacaaaaggtat-------------------ttatgtgctttaattgtaaaatagctc |
34505974 |
T |
|
| Q |
211 |
agtttctgcatagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaa |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| | || |
|
|
| T |
34505973 |
agtttctgcgtagaagtatttgattcttatctaacccaatttattatgctgatataacgatgtatgctttctacatagtggatttggaagcctcgaaaaa |
34505874 |
T |
|
| Q |
311 |
a---cggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagc |
407 |
Q |
| |
|
| ||| |||||||| ||||||||| ||||||| | |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| || |
|
|
| T |
34505873 |
aaaacggcatctcacatattcattgggcattgcatcataagaaagatgcttcctgggaacacaacaaacacgaaccaatgcctgattcaatttcgcctgc |
34505774 |
T |
|
| Q |
408 |
gtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagat |
465 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34505773 |
gtttatggacaatgtgtatcttccaagcttgaatgatattctctcagatgaagaagat |
34505716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 27617369 - 27616931
Alignment:
| Q |
11 |
cataggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttagggg |
110 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||| |||| | ||| |||||||||||||||||||||||||||||||| ||| || || ||||||||| |
|
|
| T |
27617369 |
cataggtattgtacttgattatatttgaaatttgatatcgaaatgaatgcttcactgttcctatatcagatttgtcctgtgtgtgatgaaagcttagggg |
27617270 |
T |
|
| Q |
111 |
aggatgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgctt |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
27617269 |
aggatgcaatcaggatggtgaagaactcaagcttcccaatctcacaaaaggtat-------------------ttatgtgctttaatagtaaaatagctc |
27617189 |
T |
|
| Q |
211 |
agtttctgcatagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaa |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| | || |
|
|
| T |
27617188 |
agtttctgcgtagaagtatttgattcttatctaacccaatttattatgctgatataacgatgtatgctttctacatagtggatttggaagcctcgaaaaa |
27617089 |
T |
|
| Q |
311 |
a---cggagtctcacatgttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagc |
407 |
Q |
| |
|
| ||| |||||||| ||||||| | ||||||| | |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||| || |
|
|
| T |
27617088 |
aaaacggcatctcacatattcattgagcattgcatcataagaaagatgcttcctgggaacacaacaaacacgaaccaatgcctgattcaatttcgcctgc |
27616989 |
T |
|
| Q |
408 |
gtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatgaagaagat |
465 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
27616988 |
gtttaaggacaatgtgtatcttccaagcttgaattatattctctcagatgaagaagat |
27616931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 34478214 - 34477940
Alignment:
| Q |
22 |
tacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatc |
121 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||| || || |||||||||||||||||| | |
|
|
| T |
34478214 |
tacttagttataattgaaatttgatatctgagtgactgcatcactgttcctatatcagatttgtcctttgtgtgatgaaagcttaggggaggatgcaacc |
34478115 |
T |
|
| Q |
122 |
aggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcat |
221 |
Q |
| |
|
|||||||||||||||||| ||| | | ||| | |||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||| || |
|
|
| T |
34478114 |
aggatggtgcagaactcacgcttaccatcctcgccaaaggtatctgttgcttatcttgtgatttatgtgctttaattgtaacatagctcagttt---cag |
34478018 |
T |
|
| Q |
222 |
agaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaa |
299 |
Q |
| |
|
| |||||||||||||||| ||| |||||||||||| || ||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
34478017 |
tgtagtatttgattcttatctaaatcaattcattatggtggtataaaaatgtatgcttcctacatagggaatttggaa |
34477940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 262 - 465
Target Start/End: Complemental strand, 34526694 - 34526488
Alignment:
| Q |
262 |
atataacgatgtatgctttctacataggggatttggaaccctcggagaaa---cggagtctcacatgttcattgggaattgcatgacaagaaagatgctt |
358 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||| || | |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
34526694 |
atataacgatgtatgctttctacatagtggatttggaaacctcggaaaaaaaacggcgtacaaaatgttcattgggaagtgcatggcaagaaagatgctt |
34526595 |
T |
|
| Q |
359 |
cctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctagggacaatgtgtatcttccaagcttgaatgatatgctctcagatga |
458 |
Q |
| |
|
| |||||| |||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||| || |||||||| |
|
|
| T |
34526594 |
ctagggaacacaacaaacatgaacaaatgcctgattcaatttcgccagcgtttagggagaatgtgtatcttcaaagcttgaattatatactttcagatga |
34526495 |
T |
|
| Q |
459 |
agaagat |
465 |
Q |
| |
|
||||||| |
|
|
| T |
34526494 |
agaagat |
34526488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 34463159 - 34462898
Alignment:
| Q |
34 |
attgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatcaggatggtgcag |
133 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||| |||| || || ||||||||||| |||||||| | ||||| |
|
|
| T |
34463159 |
attgaaatttgatatctgaatgactgcttcactgttcatatatcagatttgtcctgtgtgccatgaaaatttaggggaggaggcaatcagaaatatgcag |
34463060 |
T |
|
| Q |
134 |
aactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttga |
233 |
Q |
| |
|
| |||| ||||| | | | |||||||||||| ||||||||||||| |||||||||||||||||| || ||| | |||| |||| ||||||| | |
|
|
| T |
34463059 |
agttcaagcttcccagccgtgccaaaggtatctgttgcttatcttgtgatgtatgtgctttaattgtaacatagctcattttc-gcat---agtatttaa |
34462964 |
T |
|
| Q |
234 |
ttcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaa |
299 |
Q |
| |
|
||||||| ||| |||||||||||| |||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
34462963 |
ttcttatctaaatcaattcattatggtgatattacaatgtatgctttctacatagggcatttggaa |
34462898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 34526846 - 34526708
Alignment:
| Q |
46 |
tatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatcaggatggtgcagaactcaatcttc |
145 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||| ||| || || |||||||||||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
34526846 |
tatctgaatgactgctacactgttcctatatcagaattgtcctgtgtgtgatgaaagcttaggggaggatgcaatcaggatggttcagaacacaagcttc |
34526747 |
T |
|
| Q |
146 |
caaatctcacaaaaggtatctgtaacttatcttgtgatt |
184 |
Q |
| |
|
| ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
34526746 |
ccaatctcacagaaggtatctgtaaattatcttgtgatt |
34526708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 359
Target Start/End: Complemental strand, 34512237 - 34511903
Alignment:
| Q |
14 |
aggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggagg |
113 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| ||| ||| ||||||||||| ||| |||||||||||| ||||||| | || || || || ||||||| |
|
|
| T |
34512237 |
aggtatagtacttagatataattgaaatttgatatttgaatgactgcttcaatgtccctatatcagatatgtcctgtgagccatgaaaatttgggggagg |
34512138 |
T |
|
| Q |
114 |
atgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagt |
213 |
Q |
| |
|
| ||||||||| || | ||| |||| ||| |||| |||||| ||| ||||||| ||||||||||| |||||||||||||| ||| || |
|
|
| T |
34512137 |
aggcaatcagggtgccgtagagttcaagcttgcaaa---------aggtatatgttgcttatctcgtgatttatgt--tttaattgtaaaatagctcagc |
34512049 |
T |
|
| Q |
214 |
ttctgcatagaagtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacg |
313 |
Q |
| |
|
||| | ||| |||||| ||||||||| |||| |||||||| || | |||||| ||||| | |||||||||||| | | ||||||| | |||| ||||| |
|
|
| T |
34512048 |
ttccgggtaggagtattggattcttatgtaacttaattcattttgttaatataatgatgtgtactttctacatagcgcaattggaacacgcggaaaaacg |
34511949 |
T |
|
| Q |
314 |
gagtctcacatgttcattgggaattgcatgacaagaaagatgcttc |
359 |
Q |
| |
|
| ||||| ||||||||||| ||||||||| ||| || ||||||| |
|
|
| T |
34511948 |
gtgtctccattgttcattgggcattgcatgaaaaggaacatgcttc |
34511903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 349
Target Start/End: Complemental strand, 34474292 - 34473965
Alignment:
| Q |
26 |
tagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatcagga |
125 |
Q |
| |
|
||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||||||| ||||| |||| || || || |||||||| | |||||||| |
|
|
| T |
34474292 |
tagttataacttaaatttgatatctgaatgactgcttcactgctcctatatcagatttatcctgtgtgccatgaaaatttcggggaggaggaaatcagga |
34474193 |
T |
|
| Q |
126 |
tggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaa |
225 |
Q |
| |
|
||||||||| |||| ||||| || || | |||| ||||| |||||||||||||| || || ||||| ||||| || ||| | |||| | ||| |
|
|
| T |
34474192 |
tggtgcagagttcaagcttcccaaccttgcgaaagctatctactgcttatcttgtgattcatatgatttaaatgtaacatagctcactttcagggtaggt |
34474093 |
T |
|
| Q |
226 |
gtatttgattc----ttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtctca |
321 |
Q |
| |
|
| |||| |||| |||| |||| |||||| || || | ||||| |||||||| |||||||||| | | ||||| ||| | |||| |||||| ||||| |
|
|
| T |
34474092 |
gaattttattcttaattatgtaactcaattcgttgtgttaatatatcgatgtatactttctacatggcgcatttgaaactcgcggaaaaacggtgtctcc |
34473993 |
T |
|
| Q |
322 |
catgttcattgggaattgcatgacaaga |
349 |
Q |
| |
|
||||| |||||| |||||||||||||| |
|
|
| T |
34473992 |
gatgttgattgggcattgcatgacaaga |
34473965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 384
Target Start/End: Complemental strand, 27624586 - 27624432
Alignment:
| Q |
229 |
tttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtctcacatgttc |
328 |
Q |
| |
|
|||||||| ||| |||| |||||||||||| ||||| ||| |||||| || |||| |||| |||| ||||| | || || |||| | |||||| ||||| |
|
|
| T |
27624586 |
tttgattcatatctaactcaattcattatgttgataaaacaatgtatactctctaaatagcggatatggaatcttcagaaaaacagtgtctcaaatgttg |
27624487 |
T |
|
| Q |
329 |
attgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaacca |
384 |
Q |
| |
|
|||||| ||| |||| ||||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
27624486 |
attgggtattacatg-caagaaatatgcttcctgggaaaacaacaaacaagaacca |
27624432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 400
Target Start/End: Complemental strand, 34489239 - 34489064
Alignment:
| Q |
225 |
agtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacggagtctcacat |
324 |
Q |
| |
|
||||||||||||| || |||| ||||||| |||| |||||||| |||| || ||||||||||| ||||||||||||| |||| |||||| |||| | |
|
|
| T |
34489239 |
agtatttgattctcatctaactcaattcaatatgttgatataatgatgcataatttctacatagcggatttggaacccgcggaaaaacggtatctcgaac |
34489140 |
T |
|
| Q |
325 |
gttcattgggaattgcatgacaagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaattt |
400 |
Q |
| |
|
||| |||||| ||| ||| ||||||||| || || |||| | |||||||||||||||| | ||||||||||| |
|
|
| T |
34489139 |
gttgattgggcattacatctcaagaaagacgcatcttggggaaacaacaaacatgaaccaatctttgattcaattt |
34489064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 312
Target Start/End: Complemental strand, 27626333 - 27626178
Alignment:
| Q |
155 |
caaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttgattcttatataacccaattcat |
254 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||||||||| ||| || ||| | ||| |||||| ||||||||| |||| ||||||| |
|
|
| T |
27626333 |
caaaaggtatatgttgcttatcttgtgatttatgt--tttaattgtaaaatagctcagcttccgggtaggagtattggattcttatgtaacttaattcat |
27626236 |
T |
|
| Q |
255 |
tatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaac |
312 |
Q |
| |
|
| | | |||||| ||||| | |||||||||||| | | ||||||||| |||| |||| |
|
|
| T |
27626235 |
tttcttaatataatgatgtgtactttctacatagcgcaattggaacccgcggaaaaac |
27626178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 27626465 - 27626390
Alignment:
| Q |
14 |
aggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctg |
89 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||| ||| ||| |||||||| || ||| |||||||||||| ||||||| |
|
|
| T |
27626465 |
aggtatagtacttagatataattgaaatttgatatttgaatgactgctacaatgtccctatatcagatatgtcctg |
27626390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 34375769 - 34375837
Alignment:
| Q |
177 |
ttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagtatttgattcttatataac |
245 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||| ||||||||| | | | |||||||||||||| |||| |
|
|
| T |
34375769 |
ttgtgatttatgttctttgattgtaaaatagctcagtttctgcgtcggaatatttgattcttatctaac |
34375837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 27628617 - 27628562
Alignment:
| Q |
229 |
tttgattcttatataacccaattcattatgctgatataacgatgtatgctttctac |
284 |
Q |
| |
|
|||||||| || |||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
27628617 |
tttgattcatacctaactcaattcattatgttgatataacgatgtatactttctac |
27628562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 34375681 - 34375724
Alignment:
| Q |
25 |
ttagttataattgaaaattggtatctgagtgactgcttcactgt |
68 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
34375681 |
ttagttataattgaaatttggtatctgaatgactgctttactgt |
34375724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 436
Target Start/End: Complemental strand, 34487013 - 34486923
Alignment:
| Q |
345 |
caagaaagatgcttcctgggaacccaacaaacatgaaccagtgcctgattcaatttcgccagcgtctagggacaatgtgtatcttccaagct |
436 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||| | ||||||||||| |||| | | |||||||||||||||| |||||||| |
|
|
| T |
34487013 |
caagaaagatgcttcttggggaaacaacaaacatgaacca-agtctgattcaattctgccaccatttagggacaatgtgtatgatccaagct |
34486923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 34469517 - 34469428
Alignment:
| Q |
225 |
agtatttgattcttatataacccaattcattatgctgatataacgatgtatgctttctacataggggatttggaaccctcggagaaacgg |
314 |
Q |
| |
|
|||||||||||||| | |||| ||||||| |||| ||||||||||||| || ||| ||||| | ||||||||||| |||| |||||| |
|
|
| T |
34469517 |
agtatttgattcttttctaactcaattcaatatgatgatataacgatgaataatttatacattgcagatttggaacctgcggaaaaacgg |
34469428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 15741143 - 15741341
Alignment:
| Q |
15 |
ggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggagga |
114 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| || | | |||||||||||||| ||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
15741143 |
ggtatagtacttagttataattgaaatttgatatctgactggccg-ttcactgttcctat--cagatttgtcctgtgtgtgataaaaatttaggggagga |
15741239 |
T |
|
| Q |
115 |
tgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtt |
214 |
Q |
| |
|
|| ||||||||||||||||| |||| ||||| |||||| | |||||||| ||| || | ||||||||||||||||||| |||||||| || | |||||| |
|
|
| T |
15741240 |
tgtaatcaggatggtgcagagttcaagcttcccaatctcgccaaaggtatttgttacctgtcttgtgatttatgtgcttaaattgtaacataggttagtt |
15741339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 1575233 - 1575035
Alignment:
| Q |
15 |
ggtattgtacttagttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggagga |
114 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||| || | | |||||||||||||| ||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
1575233 |
ggtatagtacttagttataattgaaatttgatatctgactggccg-ttcactgttcctat--cagatttgtcctgtgtgtgataaaaatttaggggagga |
1575137 |
T |
|
| Q |
115 |
tgcaatcaggatggtgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtt |
214 |
Q |
| |
|
|| ||||||||||||||||| |||| ||||| |||||| | |||||||| ||| || | ||||||||||||||||||| |||||||| || | |||||| |
|
|
| T |
1575136 |
tgtaatcaggatggtgcagagttcaagcttcccaatctcgccaaaggtatttgttacctgtcttgtgatttatgtgcttaaattgtaacataggttagtt |
1575037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 10533829 - 10533622
Alignment:
| Q |
29 |
ttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatcaggatgg |
128 |
Q |
| |
|
|||||||||||| ||| ||||||| || ||| || ||||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
10533829 |
ttataattgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaacttaggggaggatgtaatcaggatgg |
10533732 |
T |
|
| Q |
129 |
tgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagta |
228 |
Q |
| |
|
|||||| |||| ||| || || | |||||||||||| |||| ||||||||||||||||||| |||||||| || | |||||||| | ||| |||| |
|
|
| T |
10533731 |
tgcagagttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacataggttagtttcagtgtaggagta |
10533632 |
T |
|
| Q |
229 |
tttgattctt |
238 |
Q |
| |
|
| |||||||| |
|
|
| T |
10533631 |
tctgattctt |
10533622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 10527014 - 10526843
Alignment:
| Q |
29 |
ttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatcaggatgg |
128 |
Q |
| |
|
|||||||||||| ||| ||||||| || ||| || ||||||||||| ||||||||||||| ||| ||||| ||| ||||||||| ||||||||||| |
|
|
| T |
10527014 |
ttataattgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaatttaagggaggatgtaatcaggatgg |
10526917 |
T |
|
| Q |
129 |
tgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaa |
202 |
Q |
| |
|
|||||| |||| ||| || || | |||||||||||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
10526916 |
tgcagagttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaa |
10526843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10531355 - 10531311
Alignment:
| Q |
22 |
tacttagttataattgaaaattggtatctgagtgactgcttcact |
66 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
10531355 |
tacttagttataattgaaattcggtatctgaatgactgcttcact |
10531311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 1014 - 807
Alignment:
| Q |
29 |
ttataattgaaaattggtatctgagtgactgcttcactgttcctatatcagatttgtcctgcgtgcaataaaggcttaggggaggatgcaatcaggatgg |
128 |
Q |
| |
|
|||||||||||| ||| ||||||| || ||| || ||||||||||| ||||||||||||| ||| ||||| ||| ||||||||| ||||||||||| |
|
|
| T |
1014 |
ttataattgaaatttgatatctgaatggctgttttactgttcctat--cagatttgtcctgtgtgtgataaaaatttaagggaggatgtaatcaggatgg |
917 |
T |
|
| Q |
129 |
tgcagaactcaatcttccaaatctcacaaaaggtatctgtaacttatcttgtgatttatgtgctttaattgtaaaattgcttagtttctgcatagaagta |
228 |
Q |
| |
|
|||||| |||| ||| || || | |||||||||||| |||| ||||||||||||||||||| |||||||| || | |||||||| | ||| |||| |
|
|
| T |
916 |
tgcagagttcaagactcccaacatcgccaaaggtatctgttacttgtcttgtgatttatgtgcttaaattgtaacataggttagtttcagtgtaggagta |
817 |
T |
|
| Q |
229 |
tttgattctt |
238 |
Q |
| |
|
| |||||||| |
|
|
| T |
816 |
tctgattctt |
807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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