View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_high_7 (Length: 424)
Name: NF11717_high_7
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_high_7 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 111051 - 110659
Alignment:
| Q |
1 |
tcacgttcttaataataaaaagagtactaaacatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgtactt |
100 |
Q |
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| T |
111051 |
tcacgttcttaataataaaaagagtactaagcatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgtactt |
110952 |
T |
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| Q |
101 |
caaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattagcctg |
200 |
Q |
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| T |
110951 |
caaaattattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattagcctg |
110852 |
T |
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| Q |
201 |
taagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataaagaaatcatagaatcacacaaaccgatttcagcatacactta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
110851 |
taagctgaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataa--aaatcatagaatcacaccaaccgatttcagcatacactta |
110754 |
T |
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| Q |
301 |
tagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaatgatgtccatc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
110753 |
tagtttctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaaagatttccatc |
110659 |
T |
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