View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_11 (Length: 328)
Name: NF11717_low_11
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5807146 - 5807464
Alignment:
| Q |
1 |
ccgccaccattgctttcctaagagagctttgttgaactcgttgaatcctctaaaaccgagacctccttttccttttgctctccctaattcgtcccaactt |
100 |
Q |
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| T |
5807146 |
ccgccaccattgctttcataagagagctttgttgaactcgttgaatcctctaaaaccgagacctccttttccttttgctctccctaatttgtcccaactt |
5807245 |
T |
|
| Q |
101 |
atccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgccttcaatattcgcgcaacatccttcccggatcttataacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
5807246 |
atccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgccttcaatatttgcgcaacatccttcccggatcttatagcaac |
5807345 |
T |
|
| Q |
201 |
tcatgatgtagctaagaatggctagtgccacagctctgaataaagtctccttac------------aatatttctctttccaacccttgactttcttctg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5807346 |
tcatgatgtagctaagaatggctagtgccacagctctaaataaagtctccttacctgcgttggataaatatttctctttccaacccttgactttcttctg |
5807445 |
T |
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| Q |
289 |
tatcctgtcttgaacaaaa |
307 |
Q |
| |
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|| |||||||||||||||| |
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| T |
5807446 |
tagcctgtcttgaacaaaa |
5807464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 39487556 - 39487412
Alignment:
| Q |
62 |
cctccttttccttttgctctccctaattcgtcccaacttatccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgcctt |
161 |
Q |
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| T |
39487556 |
cctcctttgctttttgctcttcctaaccgatcccaactcatccagtgaattttcctttgttgctct-tagaaccccaccaaaatttagataacatgcttt |
39487458 |
T |
|
| Q |
162 |
caatattcgcgcaacatccttcccggatcttataacaactcatgat |
207 |
Q |
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| T |
39487457 |
caatattagtgcagcacccttctggaatcttgtaacaactcatgat |
39487412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 46033679 - 46033507
Alignment:
| Q |
62 |
cctccttttccttttgctctccctaattcgtcccaacttatccaatgaattttcctctgttgctctgtagatccccactaaaacttagagagcatgcctt |
161 |
Q |
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|||||||| | ||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||| | || ||||| | ||||| || |
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| T |
46033679 |
cctcctttgctttttgctcttcctaaccgatcccaactcatccagtgaattttcctttgttgctctgtagaaccccaccagaatttagataacatgcttt |
46033580 |
T |
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| Q |
162 |
caatattcgcgcaacatccttcccggatcttataacaactcatgatgtagctaagaatggctagtgccacagc |
234 |
Q |
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| T |
46033579 |
caatattagtgcagcacccttttggaatcttgcaacaactcatgatataactagggatcgcttgtgccacagc |
46033507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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