View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_12 (Length: 306)
Name: NF11717_low_12
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_12 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 10273313 - 10273008
Alignment:
| Q |
1 |
catttcttcagtgtgtcggttctacatagttttctcctagttagttagaatggacaaaaactaacacaattccattatgtagagagtttcctatccaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10273313 |
catttcttcagtgtgtcggttctacatagttttctcctagttagttagaatggacaaaaactaacacaattacattatgtagagagtttcctatccaaaa |
10273214 |
T |
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| Q |
101 |
tggcaaggccttaagcttcatctacagcagcaaattatcacaaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccagga |
200 |
Q |
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| T |
10273213 |
tggcaaggccttaagcttcatctacagcagcaaattatcacaaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccagga |
10273114 |
T |
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| Q |
201 |
tacaggcataccatgcaggcattaaaatcccctagtgtcagtccagatgaagtaatttttagtcctgattttcagcaaacactctactgccaccttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10273113 |
tacaggcataccatgcaggcattaaaatcccctagtgtcagtccagatgaagtaatatttagtcctgattttcagcaaacactctactgccacctcttat |
10273014 |
T |
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| Q |
301 |
gtggac |
306 |
Q |
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|||||| |
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| T |
10273013 |
gtggac |
10273008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 10265605 - 10265311
Alignment:
| Q |
16 |
tcggttctacatagttttctcctagttagttagaatggacaaaaactaacacaattccattatgta----gagagtttcctatccaaaatggcaaggcct |
111 |
Q |
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| T |
10265605 |
tcggttctacatagttttctcctagttagttagaatggacaaaaagtaacacaattccattatgtatgtagagagtttcctatccaaaatggcaaggcct |
10265506 |
T |
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| Q |
112 |
taagcttcatctacagcagcaaattatcacaaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccaggatacaggcatac |
211 |
Q |
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| T |
10265505 |
taagcttcatctacagcagcaaattatcacaaacaaaagggggtgtgacagcaggaacagccacaacaaatgtgttcagaaatccaggattcaagcatgc |
10265406 |
T |
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| Q |
212 |
catgcaggcattaaaatcccctagtgtcagtccagatgaagtaatttttagtcctgattttcagcaaacactctactgccaccttttatgtggac |
306 |
Q |
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| T |
10265405 |
catgaatgcatttaaatccgatagtgtcagtccagatgaagtaatatttagtccagattttcaccaatcactctactgtcacctcttatgtggac |
10265311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 306
Target Start/End: Complemental strand, 10243690 - 10243426
Alignment:
| Q |
42 |
tagttagaatggacaaaaactaacacaattccattatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaattatcac |
141 |
Q |
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|||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10243690 |
tagttagaatttacaaaagctaacaaaattccattatgcagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaactatcac |
10243591 |
T |
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| Q |
142 |
aaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccaggatacaggcataccatgcaggcattaaaatcccctagtgtcag |
241 |
Q |
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|| | |||||||||||||||| || |||||||||||| ||||| ||||| |||||||||||| |||| | ||| | ||| | |||| ||| | ||| |
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| T |
10243590 |
aagctaaagggggtgtgacagtagcaacagccacagccaatgtattcagaaatccaggatacaagcatgcaatgaaagcacttcaatctcctggatgcag |
10243491 |
T |
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| Q |
242 |
tccagatgaagtaatttttagtcctgattttcagcaaacactctactgccaccttttatgtggac |
306 |
Q |
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| T |
10243490 |
ccctcatgatgtgatattcagtcctaattttcaccaatcactctactgccacctcttatgtggac |
10243426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 42 - 306
Target Start/End: Complemental strand, 10284514 - 10284250
Alignment:
| Q |
42 |
tagttagaatggacaaaaactaacacaattccattatgtagagagtttcctatccaaaatggcaaggccttaagcttcatctacagcagcaaattatcac |
141 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||| | ||||| |
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| T |
10284514 |
tagttagaatggacaaaaactaacacaattccattgtgtagagagtttcctatccaaaatggaaagggcttaaactttatctacagtagcaagtcatcac |
10284415 |
T |
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| Q |
142 |
aaacaaaagggggtgtgacagcaggaacagccacagcaaatgtgttcagtcatccaggatacaggcataccatgcaggca-ttaaaatcccctagtgtca |
240 |
Q |
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| T |
10284414 |
aaacagaaaatggtgtaacattagcaacagccacaacaaatctattcacaaatccaggatacaatcatatgatggaagcacttcaaattccaaactg-ca |
10284316 |
T |
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| Q |
241 |
gtccagatgaagtaatttttagtcctgattttcagcaaacactctactgccaccttttatgtggac |
306 |
Q |
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| T |
10284315 |
gtccagatgatgtaacattcagtcctgattttcaacaaacactctactgccacctcttatgtggac |
10284250 |
T |
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