View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_17 (Length: 261)
Name: NF11717_low_17
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 40105153 - 40105402
Alignment:
| Q |
6 |
cagtttcttcatttctcttgctgactcatcactccaactgaaaatggcggaaaactccaactccaacggcaacagcgtccacgtggaacacga------a |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40105153 |
cagtttcttcatttctcttgctgactcatcactccaactgaaaatggcggaaaactccaactccaacggcaacagcgtccacgtggaacacgaggaagaa |
40105252 |
T |
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| Q |
100 |
gaagaagaagaaacaaacaacttgaagcacagaaatactaaaccggtaaaacaaactttaccggaggtcctcaaccgtctcgcatccaccatccttttcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40105253 |
gaagaagaagaaacaaacaacttgaagcacagaaatactaaaccggtaaaacaaactttaccggaggtcctcaaccgtctcgcatccaccatccttttcc |
40105352 |
T |
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| Q |
200 |
cggacccggacgacggaacttccttacttcgccggatcaaaaactctgtc |
249 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40105353 |
cggacccggccgacggaacttccttacttcgccggatcaaaaactctgtc |
40105402 |
T |
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