View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_18 (Length: 207)
Name: NF11717_low_18
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 11344842 - 11344691
Alignment:
| Q |
21 |
atccctttcacttacatctccgccaactgtttcgcggcctacttcgccggtaacctctctcaaatgggaacactctttcctccacgagacaaggttgttc |
120 |
Q |
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| T |
11344842 |
atccctttcacttacatctccgccaactgtttcgcgggctactttgccggcaacctctctcaaatgggaacactctttccaccacgagacaaggttgttc |
11344743 |
T |
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| Q |
121 |
tctatggcgacggtaatgtcaaaggtgcgtaaaatcctagaaaaattagtta |
172 |
Q |
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| T |
11344742 |
tctatggcgacggtaatgtcaagggtacgtaaaatcctagaaaaattagtta |
11344691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 11308730 - 11308594
Alignment:
| Q |
18 |
aacatccctttcacttacatctccgccaactgtttcgcggcctacttcgccggtaacctctctcaaatgggaacactctttcctccacgagacaaggttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11308730 |
aacatccctttcacttacatctccgccaactgtttcgcggcctacttcgccggtaacctctctcaaatgggaacactctttcctccacgagacaaggttg |
11308631 |
T |
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| Q |
118 |
ttctctatggcgacggtaatgtcaaaggtgcgtaaaa |
154 |
Q |
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| T |
11308630 |
ttctctatggtgacggcaatgtcaaaggtacgtaaaa |
11308594 |
T |
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