View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_3 (Length: 484)
Name: NF11717_low_3
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27424587 - 27424823
Alignment:
| Q |
1 |
aaattgtcgtcttacaactattaataacatgattagtgtccgtatttgtaaa----------ctttgtgtgtggaaggatgtatcataaatgaaactttt |
90 |
Q |
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||||||| |||||| || |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
27424587 |
aaattgttgtcttaaaattattaataacatgattagtgtctgaatttgtaatacaatatcccctttatgtgtggaaggatgtatcataaatgaaactttt |
27424686 |
T |
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| Q |
91 |
aatcattattttactgtcatggatcttgtaatttatggtcggatattttgaattgattagacaataattgttttttggtcaaacaa---ctccagtcatg |
187 |
Q |
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| T |
27424687 |
aatcattattttactgtcatggatcttgtaatttatggtcggatattttgaattgattagacaataattgttttttggtcaaacaactcctccagtcatg |
27424786 |
T |
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| Q |
188 |
taactcaatttataagtttgggtttccatagaaaaaa |
224 |
Q |
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| T |
27424787 |
taactcaatttataagtttggttttccatagaaaaaa |
27424823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 27425219 - 27425307
Alignment:
| Q |
387 |
aaacattattctagatggtggtgtatgagtaaaagatcaaatagagactttgatttgtactttgaggcgtgataagtttgggcctatgc |
475 |
Q |
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| T |
27425219 |
aaacattattctagatggaggtgtatgagtaaaagatcaaatagagactttgatttgtactttgaggcgtcataagtttgggcctatgc |
27425307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 27424999 - 27425086
Alignment:
| Q |
220 |
aaaaatactaacatattaatatttgtcatttaaaataaaaacgcgtattagtctaacttttaatagttaacattattctagatggagt |
307 |
Q |
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| T |
27424999 |
aaaaatactaacatattaatatttatcatttaaaataaaaacgtgtattagtctaacttttaatagttaacattattttagatggagt |
27425086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 28805779 - 28805737
Alignment:
| Q |
335 |
ggcaggggttcaaaccccagatacccaacttctccacatttaa |
377 |
Q |
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| T |
28805779 |
ggcaggggttcaaacccctgatacccnacttctccacatttaa |
28805737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 22774088 - 22774130
Alignment:
| Q |
335 |
ggcaggggttcaaaccccagatacccaacttctccacatttaa |
377 |
Q |
| |
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| T |
22774088 |
ggcaggggttcaaaccccggacaccccacttctccacatttaa |
22774130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 333
Target Start/End: Original strand, 28021224 - 28021252
Alignment:
| Q |
305 |
agtccccgtgagtttagctcagttggtag |
333 |
Q |
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| T |
28021224 |
agtccccgtgagtttagctcagttggtag |
28021252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 6582269 - 6582305
Alignment:
| Q |
307 |
tccccgtgagtttagctcagttggtagtggcaggggt |
343 |
Q |
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| T |
6582269 |
tccccgtgagtttagctcagttggtagggacaggggt |
6582305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 25691175 - 25691227
Alignment:
| Q |
172 |
aacaactccagtcatgtaactcaatttataagtttgggtttccatagaaaaaa |
224 |
Q |
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| T |
25691175 |
aacaactctagtcatgtttctcaatttataggtttggatttccatggaaaaaa |
25691227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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