View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_4 (Length: 478)
Name: NF11717_low_4
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 5181334 - 5180884
Alignment:
| Q |
18 |
ttctggaagtcatcagatgtttgatcaagcaatttctgcagagataaagaacttataagtagataacataacgacaattttgatgaacaaggcaaattga |
117 |
Q |
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| T |
5181334 |
ttctggaagtcatcagatgtttgatcaagcaatttctgcagagataaagaacttataagtagataacataacgataattttgatgaacaaggcaaattga |
5181235 |
T |
|
| Q |
118 |
tgtcgtataatggaaagaaattgacgttgtaacttgtaaatctaaagcgacatggttcaagtcagatgtaaaatggttattagtgtcactttgtttaata |
217 |
Q |
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| T |
5181234 |
tgtcgtataatgaaaagaaattgacgttgtaacttgtaaatctaaagcgacatggttcaagtcagatgtaaaatggttattagtgtcgctttgtttaata |
5181135 |
T |
|
| Q |
218 |
ataattttcatcattccccaaattnnnnnnnnntgttttat-aaaagactttcggcatgcaaagatgtcggtatagacaactgatatctcaactatgttg |
316 |
Q |
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|||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5181134 |
ataattttcatcattccccaaattaaaaaaatatattttataaaaagactttcggtatgcaaagatgtcggtatagccaactgatatctcaactatgttg |
5181035 |
T |
|
| Q |
317 |
acacgttatccgtaaatgaaaaaagttatttattttgtaccttactaatggagattccatgctcatctctataacggttgaaagttgcgacaagttgagt |
416 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
5181034 |
acacattatccgtaaatgaaaaaagttatttattgtgtaccttactaatggagatgccatgttcatccctataacggttgaaagttgccacaagttgagt |
5180935 |
T |
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| Q |
417 |
cttactccttgtggtaagaatcctaatgacttcttcattgttgcctttctt |
467 |
Q |
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| T |
5180934 |
cttgctccttgtggtaagaatcctaatgacttcttcattgttgcctttctt |
5180884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 5185496 - 5185436
Alignment:
| Q |
394 |
ttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcat |
454 |
Q |
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| T |
5185496 |
ttgaaagttgctacaagttgtgttttgctccttgttgtaagaattctaattacttcttcat |
5185436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 454
Target Start/End: Original strand, 14173853 - 14173952
Alignment:
| Q |
355 |
accttactaatggagattccatgctcatctctataacggttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcat |
454 |
Q |
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| T |
14173853 |
accttagttatggaaatgccatggtcatctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcat |
14173952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 467
Target Start/End: Original strand, 14152406 - 14152500
Alignment:
| Q |
373 |
ccatgctcatctctataacggttgaaagttgcgacaagttgagtcttactccttgtggtaagaatcctaatgacttcttcattgttgcctttctt |
467 |
Q |
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||||| ||||||| ||||||||||||||||| |||||||||||| |||||||| |||| ||||| || ||||||||| |||| |||||||| |
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| T |
14152406 |
ccatgatcatctcggtaacggttgaaagttgccttaagttgagtcttgctccttgtaataaggatcctgataacttcttcaatgtttcctttctt |
14152500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 48703140 - 48703180
Alignment:
| Q |
184 |
tgtaaaatggttattagtgtcactttgtttaataataattt |
224 |
Q |
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| T |
48703140 |
tgtaaaatggttattagtgtcactttaattaataataattt |
48703180 |
T |
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