View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_5 (Length: 443)
Name: NF11717_low_5
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 27423880 - 27424287
Alignment:
| Q |
18 |
taccttagcttttgttggtaatagggtgttttgtgttgctattcctttgatgctttggatgttgggtccagtgcttgtatttttagcctccatagcttta |
117 |
Q |
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| T |
27423880 |
taccttagcttttgttggtaatagggtgttttgtgttgctattcctttgatgctttggatgttgggtccagtgcttgtatttttagcctccatagctttg |
27423979 |
T |
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| Q |
118 |
gtttgtttgttgcatgagtttgattatgtccctaaattcccacagggtcagaaacgatgtaccaatgtaaaataacctagctatagctagaaaattaata |
217 |
Q |
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| T |
27423980 |
gtttgtttgttgcatgagtttgattatgtccctaaattcccacagggtcagaaacgatgtaccaatgtaaaataacctagctatagctagaaaattaata |
27424079 |
T |
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| Q |
218 |
caaagtatatagtaactttgcaatgtactcatcttgaagtgttccatgtgtgaattgggattacgcagtata----ttggtggttgaaagtggaaatcta |
313 |
Q |
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| T |
27424080 |
caaagtatatagtaattttgcaatgtactcatcttgaagtgttccatgtgtgaattgggattacacagtatattggttggtggttgaaagtggaaatcta |
27424179 |
T |
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| Q |
314 |
cctgtaacaattttgaggcagctgcagtaatttaattttctcttttgagtccaaatatctttcatgtcttgaactgtgatattatctcctccc-tcaacc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27424180 |
cctgtaacaattttgaggcagctgcagtaatttaattttctcttttgagtccaaatatctttcatgtcttgaactgtgatattatctcctcccttcaacc |
27424279 |
T |
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| Q |
413 |
taaacttt |
420 |
Q |
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|||||||| |
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| T |
27424280 |
taaacttt |
27424287 |
T |
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