View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_6 (Length: 428)
Name: NF11717_low_6
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_6 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 4370385 - 4369963
Alignment:
| Q |
6 |
aagaacatagagctatgtggaaggtaacaggttgcaccataatggttgatggatcggttgacgcagagagtaggaccataataaacttgttagtgaacag |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370385 |
aagaacatagagctatgtggaaggtaacaggttgcaccataatggttgatggatcggttgacgcagagagtaggaccataataaacttgttagtgaacag |
4370286 |
T |
|
| Q |
106 |
tccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370285 |
tccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggtt |
4370186 |
T |
|
| Q |
206 |
ggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcattgctgttggttagatgttgatggataaaagaactatgctgtatttgacca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||| |||| |
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| T |
4370185 |
ggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcagagctgttggtgagatgttgatggagaaaagaactaggctgtattggaccc |
4370086 |
T |
|
| Q |
306 |
cttgttcaacatatttcattcatatgattttgtcagactgtgagacgaatatacctattcactcaaagataactaagaaatgtcaagattttatagccgt |
405 |
Q |
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||||| ||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |
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| T |
4370085 |
cttgtgcaacaaattgcattcagatgattttggcagactgtgagacgaatatacctattcactcagagataactaagaaatgtcaagatcttatagcctt |
4369986 |
T |
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| Q |
406 |
tatttatataagtccttctgtca |
428 |
Q |
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||||||| |||| |||||||||| |
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| T |
4369985 |
tatttatgtaagcccttctgtca |
4369963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 428
Target Start/End: Complemental strand, 4365989 - 4365563
Alignment:
| Q |
8 |
gaacatagagctatgtggaaggtaacaggttgcaccataatggttgatggatcggttgacg------cagagagtaggaccataataaacttgttagtga |
101 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| |||||||| |
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| T |
4365989 |
gaacatagagctatatggaaagtaacaggttgcaccataatggttgatggatcggctgacagtgacacggagagtaggaccatactaaactggttagtga |
4365890 |
T |
|
| Q |
102 |
acagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaaga |
201 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||| || |||||||||| |
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| T |
4365889 |
acagtccaaagggaacattctttttgaagtctattgatgcgtctgatatgttggaatcgcctgagaaactctttaagatgatggatgacgttgttgaaga |
4365790 |
T |
|
| Q |
202 |
ggttggagaagaaaatgttgtccaaattgtgacggacaatacaccattctgcattgctgttggttagatgttgatggataaaagaactatgctgtatttg |
301 |
Q |
| |
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|||||| |||||||||| |||||| ||||||||||| ||||| || || | || | | | |||| |||||| ||||| |||| |||||||| | |
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| T |
4365789 |
ggttggggaagaaaatgctgtccacattgtgacggaatatacagaatactacgcagcagccgctatgatgctgatggcgaaaaggactaggctgtattgg |
4365690 |
T |
|
| Q |
302 |
accacttgttcaacatatttcattcatatgattttgtcagactgtgagacgaatatacctattcactcaaagataactaagaaatgtcaagattttatag |
401 |
Q |
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||| ||||| ||||| ||| ||||| | ||| ||| |||||||||| ||||||||||||||||||| |||||| |||||| ||||| | ||||| |
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| T |
4365689 |
accccttgtgcaacagattgcattctgacgatattggaagactgtgaggagaatatacctattcactcagagataattaagaagtgtcagagtcttataa |
4365590 |
T |
|
| Q |
402 |
ccgttatttatataagtccttctgtca |
428 |
Q |
| |
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|| ||||| ||| ||| |||||||||| |
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| T |
4365589 |
cctttattcatacaaggccttctgtca |
4365563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 248
Target Start/End: Complemental strand, 4360518 - 4360347
Alignment:
| Q |
77 |
aggaccataataaacttgttagtgaacagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttc |
176 |
Q |
| |
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|||| |||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
4360518 |
aggaacatactaaacttgttactgaacagtccaaagggaacattctttttgaagactattgatgcgtctgatatgttggaatcgtctgagaaactcttta |
4360419 |
T |
|
| Q |
177 |
ggattttggacaacattgttgaagaggttggagaagaaaatgttgtccaaattgtgacggacaatacaccat |
248 |
Q |
| |
|
|| |||| || |||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||| |
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| T |
4360418 |
aaatgatggatgacgttgttgaagaggttggggaagaaaatgttgtccacgttgtaacggaatatacaccat |
4360347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 4414439 - 4414568
Alignment:
| Q |
114 |
gaacattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaaga |
213 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||||||||| ||| ||||||||||| ||| |||| | ||||| ||||||||||| ||||| |
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| T |
4414439 |
gaacattctttttgaagtccgttgatgcgtcgaatatgttggaatcacctaacaaactctttaagatgatggatgaaattgtagaagaggttgg-gaaga |
4414537 |
T |
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| Q |
214 |
aaatgttgtccaaattgtgacggacaataca |
244 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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| T |
4414538 |
aaatgttgtccaaattgtgacagacaataca |
4414568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 5725317 - 5725549
Alignment:
| Q |
7 |
agaacatagagctatgtggaaggtaacaggttgcaccataatggttgatggatcggttgacgcaga--gagt--aggaccataataaacttgttagtgaa |
102 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||| |||| | | ||| | ||| |||| ||| |||| ||||||| || || || |
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| T |
5725317 |
agaacatagagctgtgtggaagataacaggttgcaccataatggtcgatgactggtatgatg-agaaggagtttagggacatactaaacttcttcgtaaa |
5725415 |
T |
|
| Q |
103 |
cagtccaaacggaacattctttttgaagtctattgatgcaactgatatgttggaa--tcgcctgacaaactctttcggattttggacaacattgttgaag |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| || ||||||| || || ||||| |||| ||| ||| |||| |||||||||||| |
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| T |
5725416 |
cagtccaaagggaacattctttttgaagtctgttgaatcagctgatat-----aagttcacctgaagaactatttaagatgatggatgacattgttgaag |
5725510 |
T |
|
| Q |
201 |
aggttggagaagaaaatgttgtccaaattgtgacggaca |
239 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5725511 |
aagttggggaagaaaatgttgtccaaattgtgacggaca |
5725549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 4390111 - 4389987
Alignment:
| Q |
119 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
218 |
Q |
| |
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|||||||||||||| ||||||| | ||||||||||||||| |||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
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| T |
4390111 |
ttctttttgaagtcggttgatgcgtccgatatgttggaatcgtctgagaaattgtttaagatgatggatgatgttgttgaagaggttggtgaagaaaatg |
4390012 |
T |
|
| Q |
219 |
ttgtccaaattgtgacggacaatac |
243 |
Q |
| |
|
|||| ||| |||||||||| ||||| |
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| T |
4390011 |
ttgttcaagttgtgacggataatac |
4389987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 4377431 - 4377304
Alignment:
| Q |
116 |
acattctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaa |
215 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| ||||||||||||| ||| | ||| ||| |||| | |||||||||||||||| ||||||| |
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| T |
4377431 |
acattctttttgaagtcggttgatgcgtcagatatgatggaatcgcctgagaaattgtttaagatgatggatgatgttgttgaagaggttggggaagaaa |
4377332 |
T |
|
| Q |
216 |
atgttgtccaaattgtgacggacaatac |
243 |
Q |
| |
|
||||||| ||| |||| ||||| ||||| |
|
|
| T |
4377331 |
atgttgttcaagttgtaacggataatac |
4377304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 4360589 - 4360539
Alignment:
| Q |
6 |
aagaacatagagctatgtggaaggtaacaggttgcaccataatggttgatg |
56 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||||||| |||| |
|
|
| T |
4360589 |
aagaacatagagctatgtggaagatcacaggttgcagcataatggtcgatg |
4360539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 4385001 - 4384877
Alignment:
| Q |
119 |
ttctttttgaagtctattgatgcaactgatatgttggaatcgcctgacaaactctttcggattttggacaacattgttgaagaggttggagaagaaaatg |
218 |
Q |
| |
|
|||||||| ||||| ||||||| | ||||||||||||||| |||| ||| | ||| ||| |||| | |||||||||||||||| |||||||||| |
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|
| T |
4385001 |
ttctttttaaagtcggttgatgcgtcagatatgttggaatcgtctgagaaattgtttaagatgatggatgatgttgttgaagaggttggggaagaaaatg |
4384902 |
T |
|
| Q |
219 |
ttgtccaaattgtgacggacaatac |
243 |
Q |
| |
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|||| ||| |||| ||||| ||||| |
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| T |
4384901 |
ttgttcaagttgtcacggataatac |
4384877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 15658720 - 15658753
Alignment:
| Q |
192 |
ttgttgaagaggttggagaagaaaatgttgtcca |
225 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
15658720 |
ttgttgaagagattggagaagaaaatgttgtcca |
15658753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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