View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11717_low_8 (Length: 395)
Name: NF11717_low_8
Description: NF11717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11717_low_8 |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 15061829 - 15062202
Alignment:
| Q |
8 |
cgggatctggtattcagaatttgtggctccacaatcagaacccaaacgggtttactggttctatctacgtgcttgcttcgatgacccacttgactcaggt |
107 |
Q |
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| T |
15061829 |
cgggatctggtattcagaacttgtggctcaacaatcagaagccaaacgggtttacaggttctatcaacgtgcttgcttcgatgactcagttgactcaggt |
15061928 |
T |
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| Q |
108 |
ttggcttatgaataacaagttcactggtcaaattcccgatttctccaactgtaccgatttatttgatctgcagcttcgggataatcagttaacaggtgtt |
207 |
Q |
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| T |
15061929 |
ttggcttatgaataacaagtttactggtcaaattcccgatttctccaactgtaccgatttatttgatctgcagcttcgggataatcagttaacaggtgtt |
15062028 |
T |
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| Q |
208 |
gttccatcttctttaatggctttgtctagcttgcagaacgtttccttggacaacaatcttttgcaaggcccttttccttcttttggcaaaggtgtgtcgt |
307 |
Q |
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| T |
15062029 |
gttccatcttctttaatggctttgtctagcttgaagaacgtttccttggacaacaatcatttgcaaggcccttttccttcttttggcaaaggtgtgtcgt |
15062128 |
T |
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| Q |
308 |
tcactcttgatgaaatccatagcttctgtcaaaacactcctggaccctgcgatccgcgagtcactactttactc |
381 |
Q |
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| T |
15062129 |
tcactcttgatgaaatccatagcttctgtcaaaacgctcctggaccctgcgatccgcgggtcactactttactc |
15062202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 54 - 373
Target Start/End: Original strand, 31437542 - 31437867
Alignment:
| Q |
54 |
cgggtttactggttctatctacgtgcttgcttcgatgacccacttgactcaggtttggcttatgaataacaagttcactggtcaaattcccgatttctcc |
153 |
Q |
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| T |
31437542 |
cgggtttacaggctctattgacgtgcttgcttcaatgactcacgcggctcaagtttggcttatgaagaacaagttcactggtgaaattcctgatttgtcc |
31437641 |
T |
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| Q |
154 |
aactgtaccgatttatttgatctgcagcttcgggataatcagttaacaggtgttgttccatcttctttaatggctttgtctagcttgcagaacgtttcct |
253 |
Q |
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| T |
31437642 |
aagtgtaccaatttatttgatctacaacttcgggataatcagttaacaggtgttgttccgccttctttaatggttttgtccagtttgcgaaacgttacct |
31437741 |
T |
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| Q |
254 |
tggacaacaatcttttgcaaggcccttttccttcttttggcaaaggtgtgtcgttcactcttgatgaa------atccatagcttctgtcaaaacactcc |
347 |
Q |
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| T |
31437742 |
tggacaacaatcaattgcagggtccttttccttcttttgggaaaggtgtacggttcattcctaatgaacctgatttcaatagcttttgtcgaaacacttc |
31437841 |
T |
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| Q |
348 |
tggaccctgcgatccgcgagtcacta |
373 |
Q |
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| T |
31437842 |
tggaccttgcgatccacgagtcacta |
31437867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 38161571 - 38161393
Alignment:
| Q |
124 |
aagttcactggtcaaattcccgatttctccaactgtaccgatttatttgatctgcagcttcgggataatcagttaacaggtgttgttccatcttctttaa |
223 |
Q |
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| T |
38161571 |
aagtttactggttcaattcctgatttgtctaattgtactaacttgtttgatcttcagcttcgtgataatcagttaacaggtgttgttccatcctctttga |
38161472 |
T |
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| Q |
224 |
tggctttgtctagcttgcagaacgtttccttggacaacaatcttttgcaaggcccttttccttcttttggcaaaggtgt |
302 |
Q |
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| T |
38161471 |
tgagtttatcgagtttggcgaatgtttctttggataataataagttgcagggtcctttgccttcttttgggaaaagtgt |
38161393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2227 - 2176
Alignment:
| Q |
11 |
gatctggtattcagaatttgtggctccacaatcagaacccaaacgggtttac |
62 |
Q |
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| T |
2227 |
gatctgatattcagaacttgtggctcaacgatcagaagccaaacgggtttac |
2176 |
T |
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