View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11718_high_10 (Length: 582)
Name: NF11718_high_10
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 572
Target Start/End: Complemental strand, 37556285 - 37555729
Alignment:
| Q |
17 |
cacggaagatatagactataaactttttcaacacaggtaacttgactgtgtcacaatccttaatgttacnnnnnnnttctgtcaaatacgactgatgaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37556285 |
cacggaagatatagactataaactttttcaacacaggtaacttgattgtgtcacaatccttaatgttacaaaaaatttctgtcaaatacgactgatgaga |
37556186 |
T |
|
| Q |
117 |
ctgcaattgaggttgcaaagcggtcacaaacacatcaaaaaccttgacatcaggacctcaaatgcggctgcacttgcaaaccattttcaataaactttgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
37556185 |
ctgcaattgaggttgcaaagcggtcacagacacatcaaaaaccttgacatcaggacctcaaatgcagttgcgcttgcaaaccattttcaataaactttgt |
37556086 |
T |
|
| Q |
217 |
caaacgtacatgtagagtttggttaaacttgagttatcaagtaacacacagagttgaattc-attaactataaatagctaacctgaatgggagttcttcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37556085 |
caaacgtacatgtagagtttggttaaacttgagttatcaagtaacacacagagttgaattccattaactataaatagctaacctgaatgggagttcttcc |
37555986 |
T |
|
| Q |
316 |
attaaagaaaggtttattatccacacccagtgaaatacattctttattcatgaaacctgaactgttgatgtaaaagatatcaggatttgattcaccaact |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37555985 |
attaaagaaaggtttattatccacacccagtgaaatacattctttattcatgaaacctgaactattggtgtaaaagatatcaggatttgattcaccaact |
37555886 |
T |
|
| Q |
416 |
tcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatgacattatagcttgtaacttaagtttgcaatcct |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37555885 |
tcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatgacattatagcttgtaacttaagtttgcaatcct |
37555786 |
T |
|
| Q |
516 |
gaacaagctgaaacaaggacctataagctgaccaatcatactgctgaggaccctttg |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37555785 |
gaacaagctgaaacaaggacctataagctgaccaatcatactgctgaggaccctttg |
37555729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 495
Target Start/End: Complemental strand, 15502654 - 15502543
Alignment:
| Q |
384 |
tgtaaaagatatcaggatttgattcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatga |
483 |
Q |
| |
|
|||| ||||||||||||| |||||| |||| |||||||||||||| || ||||| ||| |||| ||| || | ||| |||||||||||||| ||||| |
|
|
| T |
15502654 |
tgtagaagatatcaggatctgattctccaatgtcaagtacccattttggcaatgggatgttaacaacatcacctacatttcctccacattgatggaatga |
15502555 |
T |
|
| Q |
484 |
cattatagcttg |
495 |
Q |
| |
|
||| |||||||| |
|
|
| T |
15502554 |
catgatagcttg |
15502543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University