View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_15 (Length: 549)
Name: NF11718_high_15
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Complemental strand, 34062549 - 34062069
Alignment:
| Q |
20 |
ccaatctcaattggtcaaaacaatgaaaaatatgaactctagaattctcctaaaccaaaattaccatgaaacaaaacaaccaaggtgactcgtgaacacc |
119 |
Q |
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| T |
34062549 |
ccaatctcaattggtcaaaacaatgaaaaatatgaactctagaattctcctaaaccaaaattaccatgaaacaaaacaaccaaggtgacccgtgaacacc |
34062450 |
T |
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| Q |
120 |
atagtcatcatgaattaaattgaacattaatgaaactctaaaccaaaattaccatgacatgtcccacacaacacaacatagatctcacaacatgaaagca |
219 |
Q |
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| T |
34062449 |
atagtcatcatgaattaaattgaacattaatgaaactctaaaccaaaattaccatgacatgtcccacacaacacaacatagatctcacaacatgaaagca |
34062350 |
T |
|
| Q |
220 |
tgacagagtaaaaggttttctttccagacagcaacaatgnnnnnnnnnnnnnnnntttagaataatgtcatcatgatagatagtattctatcattttctt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34062349 |
tgacagagtaaaaggttttctttccagacagcaacaatgaaaaaaaaaggaaaaatttagaataatgtcatcatgatagatagtattctatcattttctt |
34062250 |
T |
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| Q |
320 |
tctcttcttttcgtgccgccccacactctctcttttttcaaaccaacaaagctcacatatccaatgccataacacatacattcagcttcttttgtgaatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34062249 |
tctcttcttttcgtgccgccccacactctctcttttttcaaaccaacaaagctcacatatccaatgccataacacatacattcagcttcttttgtgaatg |
34062150 |
T |
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| Q |
420 |
ttttgtctcataaaccaaacaaaaaaatatacatagnnnnnnnnnncaggggattcccacatatccttgatttctggtgag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34062149 |
ttttgtctcataaaccaaacaaaaaaatatacatagaaaaaaaaaacaggggattcccacatatccttgatttctggtgag |
34062069 |
T |
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