View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_17 (Length: 541)
Name: NF11718_high_17
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 51740015 - 51739501
Alignment:
| Q |
19 |
catatttctataatcatcgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttctatttcttgtatttaacc |
118 |
Q |
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| T |
51740015 |
catatttctataatcattgaggtagttaaaagaataaagaggatgaataatagttcaggggcttttaggtacttttggtttctatttcttgtatttaacc |
51739916 |
T |
|
| Q |
119 |
aaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtgctgcattatacttcttatcatccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51739915 |
aaatggctaagtatctattcataagaaccacaaaacttgtaagaatgagacaacttaaaccctttgaagcttgtgccgcattatacttcttatcatccat |
51739816 |
T |
|
| Q |
219 |
cttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgacatcagatgcggcaaacctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51739815 |
cttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcggacacagcgattcgaccgacatcagatgcggcaaacctt |
51739716 |
T |
|
| Q |
319 |
aaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttgaaccatcgatgcctaatt |
418 |
Q |
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| T |
51739715 |
aaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttgaaccatcgatgcctaatt |
51739616 |
T |
|
| Q |
419 |
cttgatataaataaaatgagacagatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacgtagattacgcaatgcgta |
518 |
Q |
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| T |
51739615 |
cttgatataaataaaatgagacagatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacgtagattacgcaatgcgta |
51739516 |
T |
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| Q |
519 |
ttgaatattcatctc |
533 |
Q |
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| T |
51739515 |
ttgaatattcatctc |
51739501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 10200643 - 10200578
Alignment:
| Q |
66 |
taatagttcaggggcttttaggtacttttggtttctatttcttgtatttaaccaaatggctaagta |
131 |
Q |
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| T |
10200643 |
taatagttcagtagcttttaggtatttttggtttctatttcttgagtttaaccaaacggctaagta |
10200578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 10200481 - 10200362
Alignment:
| Q |
246 |
caataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgacatcagatgcggcaaaccttaaatctgctgccaaacggatgaccata |
345 |
Q |
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|||||||||| |||||||| |||||| || | |||||| |||||||| |||| ||| ||||| ||||| | ||| || || | |||||| || ||||| |
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| T |
10200481 |
caataagcaagccatttctgtaatcaacgctgaagacaccgcgattcgcccgatatcggatgcagcaaatcgtaactccgccgtcaaacgaatcaccatg |
10200382 |
T |
|
| Q |
346 |
ggggaacttgtgtatgatac |
365 |
Q |
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||||| |||||||||||||| |
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| T |
10200381 |
ggggagcttgtgtatgatac |
10200362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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