View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_18 (Length: 512)
Name: NF11718_high_18
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 11485327 - 11485077
Alignment:
| Q |
25 |
ttttcaatgtaaatgttactgaaccgtgaatatgttgtagtgacgatttgttactaacattccttttctagatctttttactaaaaatagtaaaggtaca |
124 |
Q |
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| T |
11485327 |
ttttcaatgtaaatgttactgaaccttgaatatgttgtagtgacgatttgttactaac---ccttttgtagatctttttactaaaaatagtaaaggtaca |
11485231 |
T |
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| Q |
125 |
cctttaaaccatttttaagaaatttatatcagacacaccctcaaacatatatacgaggtaacaagttgaatatcatagagaatatgggaacaatacatag |
224 |
Q |
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| T |
11485230 |
cctttaaaccatttttaagaaatttatattagacacaccctcaaacatatatacgaggtacgaagttgaatatcatagagaatatgggaacaatacatag |
11485131 |
T |
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| Q |
225 |
acnnnnnnntaataataaaagcctatgcaaccaaactaaatattttttcagaga |
278 |
Q |
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| T |
11485130 |
acaaaaaaataataaagaaagcctatccaaccaaactaaatattttttcagaga |
11485077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 373 - 508
Target Start/End: Complemental strand, 11484948 - 11484813
Alignment:
| Q |
373 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctacacatttagattcaaaggtcttttgccaacaa |
472 |
Q |
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| T |
11484948 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctaaacatttagattcaaaggtcttttgccaacaa |
11484849 |
T |
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| Q |
473 |
gttgaacaagttgcgcatcttctcaagtttgttcat |
508 |
Q |
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| T |
11484848 |
gttgaacaagttgcgcatcttctcaagtttgttcat |
11484813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 11485041 - 11484981
Alignment:
| Q |
280 |
caaaactaaatatatagtatttggtggaatgtatgaatgagttttactatatcaaattgtc |
340 |
Q |
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| T |
11485041 |
caaaattaaatatatagtatttggtggaatgtatgaaagagttttactatatcaaattgtc |
11484981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 9472711 - 9472674
Alignment:
| Q |
99 |
tttttactaaaaatagtaaaggtacacctttaaaccat |
136 |
Q |
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| T |
9472711 |
tttttactaaaaatagtaaaggtccacctttgaaccat |
9472674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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