View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_19 (Length: 503)
Name: NF11718_high_19
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 5076269 - 5076736
Alignment:
| Q |
15 |
atgaagacattgtgcaatatgatggaatttctggcgaa-gaatgaagagtggctgacaaagccaagtcatggagcaatgaaaactcctttaaatggccaa |
113 |
Q |
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| T |
5076269 |
atgaagacattgtgcgatatgatggaatttctggcaaaagaatgaagagtggctgacaaagccaagtcatggagcaatggaaactcctttaaatggccaa |
5076368 |
T |
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| Q |
114 |
gtagtggaaattcactcaaaaacttcaaacttcgtagtaactagttccaaaattgtcgctaaggagacaaaaaagtcaaatatcaactttaatttgcagt |
213 |
Q |
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| T |
5076369 |
ctagtggaaattcactcaaaaacttcaaacttcgtagtaactagttccaaaattgtcgctaaggagacaaaaaagccaaatatcaactttaatttgcagt |
5076468 |
T |
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| Q |
214 |
ggttgttacggccagccataacccatggaaaaagtatgaaaatgttaatcctttacttgcaacagttttgattttccatgttacattaatattttttagt |
313 |
Q |
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| T |
5076469 |
ggttgttacggccagccataacccatggaaaaagtatgaaaatgttaatcctttacttgcaacagttttgattttccaagttacattaatattttttagt |
5076568 |
T |
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| Q |
314 |
tcatgactttggtctgaatccttaatacctatttctatctcaggctgctgtttatgttggtgaagatggatcctttggtgatgataagcataaccaccag |
413 |
Q |
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| T |
5076569 |
tcatgactttggtttgaatccttaatacctatttttatctcaggctgctgattatgttggtgaagatggatcatttggtgatgataagcata---accag |
5076665 |
T |
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| Q |
414 |
cctaagtcgttgagagtttcatgacggttgagtggtgcaacatgtatccttaaacataatgaatttcttgg |
484 |
Q |
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| T |
5076666 |
ccttagccgttgagagtttcatgacggttgagtggtgcaacatgtatccttaaacataataaatttcttgg |
5076736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 5086433 - 5086498
Alignment:
| Q |
297 |
cattaatatttttt-agttcatgactttggtctgaatccttaatacctatttctatctcaggctgctg |
363 |
Q |
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| T |
5086433 |
cattaatatttttttaattcacgactttggtctaaatccatgatacctatttc--tctcaggctgctg |
5086498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 40143108 - 40143164
Alignment:
| Q |
72 |
aagccaagtcatggagcaatgaaaactcctttaaatggccaagtagtggaaattcac |
128 |
Q |
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| T |
40143108 |
aagccaagtcatgaagcaatgaaaacttttttcaatggtcaaatagtggaaattcac |
40143164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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