View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11718_high_2 (Length: 836)
Name: NF11718_high_2
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_2 |
 |  |
|
| [»] scaffold0002 (3 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 346 - 830
Target Start/End: Original strand, 6954140 - 6954624
Alignment:
| Q |
346 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954140 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
6954239 |
T |
 |
| Q |
446 |
cctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaattttaggaaattacttgagtctatgtcaactaaatnnnnnnnnnnggg |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6954240 |
cctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaattttaggaaattacttgagtctatgtcaactaaataaaaaaaaaaggg |
6954339 |
T |
 |
| Q |
546 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954340 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
6954439 |
T |
 |
| Q |
646 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954440 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
6954539 |
T |
 |
| Q |
746 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgc |
830 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954540 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgc |
6954624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 165 - 366
Target Start/End: Original strand, 10477754 - 10477955
Alignment:
| Q |
165 |
gaatattgttgaaatagtaacattctttttggagcgcagaaaaagtctaaacaaaatggaatcattcattttcagactcactttctatacctagaatata |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10477754 |
gaatattgttgaaatattaacattctttttggagcgcagaaaaaatcgaaacaaaatggaatcattcattttcagactaactttctatacctagaatata |
10477853 |
T |
 |
| Q |
265 |
catctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaat |
364 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10477854 |
catccattcattctttagctagaaagagtatatctccgtacgcctagaaaaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaat |
10477953 |
T |
 |
| Q |
365 |
tt |
366 |
Q |
| |
|
|| |
|
|
| T |
10477954 |
tt |
10477955 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 167 - 324
Target Start/End: Original strand, 6953989 - 6954146
Alignment:
| Q |
167 |
atattgttgaaatagtaacattctttttggagcgcagaaaaagtctaaacaaaatggaatcattcattttcagactcactttctatacctagaatataca |
266 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6953989 |
atattgttgaaatattaacattctttttggagcgcagaaaaaatcgaaacaaaatggaatcattcattttcagactcactttctatacctagaatataca |
6954088 |
T |
 |
| Q |
267 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954089 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
6954146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 204 - 404
Target Start/End: Original strand, 37421880 - 37422086
Alignment:
| Q |
204 |
aaaaagtctaaacaaaatggaatcattcattttcagactcac--tttctatacctagaatatacatctattcattctttagctagaaagagtatatctcc |
301 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |||| |||| ||||| ||||| |||| |||||||| ||| ||| || |||||| |
|
|
| T |
37421880 |
aaaaagtcagaacaaaattgaatcattcattttcagactcacattttccctaccaagaatgtacatttatttattctttatctaaaaa-agcgtatctct |
37421978 |
T |
 |
| Q |
302 |
gtacgcctagataaattatgtatgatgatcaagaccact-aaaaatatgtatctattcccaaatttatt----aaaatttgggaatagatactcatagaa |
396 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||| ||||| |||||||||||||||| || |
|
|
| T |
37421979 |
ttgcaccaagataaattatgtatgatgatcaagaccactgataaatatgtatctattcccatattaattttaataaattaaggaatagatactcatacaa |
37422078 |
T |
 |
| Q |
397 |
atgaatcg |
404 |
Q |
| |
|
|||||||| |
|
|
| T |
37422079 |
atgaatcg |
37422086 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 37422397 - 37422485
Alignment:
| Q |
204 |
aaaaagtctaaacaaaatggaatcattcattttcagactcactttctatacctagaatatacatctattcattctttagctagaaagag |
292 |
Q |
| |
|
||||| || |||||| || |||||||| ||| || |||| ||||| ||||| | |||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
37422397 |
aaaaaatcaaaacaagattgaatcatttattatctgactaactttttatacttggaatatccatctattcattctttatctaggaagag |
37422485 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 346 - 830
Target Start/End: Complemental strand, 18183949 - 18183465
Alignment:
| Q |
346 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183949 |
tatgtatctattcccaaatttattaaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagt |
18183850 |
T |
 |
| Q |
446 |
cctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaattttaggaaattacttgagtctatgtcaactaaatnnnnnnnnnnggg |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18183849 |
cctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaattttaggaaattacttgagtctatgtcaactaaataaaaaaaaaaggg |
18183750 |
T |
 |
| Q |
546 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183749 |
atataggataaaaaattagcgaattaaatgggcttttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaa |
18183650 |
T |
 |
| Q |
646 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183649 |
tttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttattcaaaagatccatcagactatggtggagtga |
18183550 |
T |
 |
| Q |
746 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgc |
830 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183549 |
ctgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagtctctgc |
18183465 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 167 - 324
Target Start/End: Complemental strand, 18184100 - 18183943
Alignment:
| Q |
167 |
atattgttgaaatagtaacattctttttggagcgcagaaaaagtctaaacaaaatggaatcattcattttcagactcactttctatacctagaatataca |
266 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18184100 |
atattgttgaaatattaacattctttttggagcgcagaaaaaatcgaaacaaaatggaatcattcattttcagactcactttctatacctagaatataca |
18184001 |
T |
 |
| Q |
267 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18184000 |
tctattcattctttagctagaaagagtatatctccgtacgcctagataaattatgtat |
18183943 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 696 - 830
Target Start/End: Complemental strand, 35160302 - 35160168
Alignment:
| Q |
696 |
cgtctgattaatcagttattcaaaagatccatcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaac |
795 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35160302 |
cgtctcattaatcagttattcaaaagatcaatcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaac |
35160203 |
T |
 |
| Q |
796 |
tccatttgttagaacagcttccattgagtctctgc |
830 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
35160202 |
tccaattgttagaacagcttccattgagtctctgc |
35160168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 170 - 520
Target Start/End: Original strand, 22332537 - 22332886
Alignment:
| Q |
170 |
ttgttgaaatagtaacattctttttggagcgcagaaaaagtctaaacaaaatggaatcattcattttcagactcactttctatacctagaatatacatct |
269 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22332537 |
ttgttgaaatattaacattcattttggagcgcagaaaaaatcgaaacaaaatggaatcattcattttcagactcactttctattcctagaatatacatct |
22332636 |
T |
 |
| Q |
270 |
attcattctttagctagaaagagtatatctccgtacgcctagataaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaatttatt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22332637 |
attcattctttagctagaaagagtatatttccgtacgcctagataaattatgtatgatgatcaagaccactaaaaatatgtatctattcccaaattta-t |
22332735 |
T |
 |
| Q |
370 |
aaaatttgggaatagatactcatagaaatgaatcgccgggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccagctgagctat |
469 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22332736 |
aaaatttgggaatagattctcatagaaatgaatcgtcgggaaccagatttgaactggtgacacgaggattttcagtcccctgctctaccagctgagctat |
22332835 |
T |
 |
| Q |
470 |
cccgaccattcttgacacaccaccctaattttaggaaattacttgagtcta |
520 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22332836 |
cccaaccattctagacacaccaccctaattttaggaaattacttgagtcta |
22332886 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 616 - 824
Target Start/End: Original strand, 13622034 - 13622242
Alignment:
| Q |
616 |
aaagtcgacggattttcctcttactaaaaatttcattgatgtcggtattgacatgtagaatgggactctatctttattctcgtctgattaatcagttatt |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
13622034 |
aaagtcgacggattttcctcttactaaaaatttcattgatgtcggtattgacatgtagaatgggactcgatctttattttcgtctgattaatcagttatt |
13622133 |
T |
 |
| Q |
716 |
caaaagatccatcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagctt |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13622134 |
caaaagatccatcagactatggtggagtgactgatttgatcaatcaatattattctattgaaagagtaaatgttgtcaactccatttgttagaacagctt |
13622233 |
T |
 |
| Q |
816 |
ccattgagt |
824 |
Q |
| |
|
||||||||| |
|
|
| T |
13622234 |
ccattgagt |
13622242 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 17500766 - 17500817
Alignment:
| Q |
87 |
ttagggttaataccatttttgatccctacaatatgagcgaattccagtttta |
138 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||| |||||| |
|
|
| T |
17500766 |
ttagggttaataccatttttggtccctgtaatattagcgaattccggtttta |
17500817 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 403 - 579
Target Start/End: Original strand, 41244927 - 41245103
Alignment:
| Q |
403 |
cgccgggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccagctgagctatcccgaccattcttgacacaccaccctaatttta |
502 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
41244927 |
cgccgggaatcagatttgaactggtgacacgaggattttcaatcctctactgtaccagctgagctatcccgatcattcttgacacaccatcttaatttta |
41245026 |
T |
 |
| Q |
503 |
ggaaattacttgagtctatgtcaactaaatnnnnnnnnnngggatataggataaaaaattagcgaattaaatgggct |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41245027 |
ggaaattacttgagtctatgtcaactaaataaaaaaaaaagggatataggataaaaaattagcgaattaaatgggct |
41245103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 38927181 - 38927138
Alignment:
| Q |
165 |
gaatattgttgaaatagtaacattctttttggagcgcagaaaaa |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
38927181 |
gaatattgttgaaatattaacattctttttggagcgcataaaaa |
38927138 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 35741963 - 35741914
Alignment:
| Q |
89 |
agggttaataccatttttgatccctacaatatgagcgaattccagtttta |
138 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
35741963 |
agggttaataccacttttggtccctgtaatattagcgaattccagtttta |
35741914 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 8e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 725 - 830
Target Start/End: Original strand, 28712577 - 28712682
Alignment:
| Q |
725 |
catcagactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatgttgtcaactccatttgttagaacagcttccattgagt |
824 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28712577 |
catcaaactatggtggagtgactgatttgatcaatcaagattattctattgaaagagtaaatattgtcaactccatttgttagaacagcttccattgagt |
28712676 |
T |
 |
| Q |
825 |
ctctgc |
830 |
Q |
| |
|
|||||| |
|
|
| T |
28712677 |
ctctgc |
28712682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 28070465 - 28070514
Alignment:
| Q |
89 |
agggttaataccatttttgatccctacaatatgagcgaattccagtttta |
138 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||| ||||||| |
|
|
| T |
28070465 |
agggttaataccatttttggtccctgtaatatgagtgaattctagtttta |
28070514 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 15942604 - 15942474
Alignment:
| Q |
1 |
aatgtaaatataagattggtcaatgacacatcagatcnnnnnnnttaaattttttaactctaaaattttcaaggaaatagaacgtcttagggttaatacc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15942604 |
aatgcaaatataagattggtcaatgacacatcagatcaaaaaaattaaattttttaactctaaaattttcaaggaaatagaacatcttagggttaatatt |
15942505 |
T |
 |
| Q |
101 |
atttttgatccctacaatatgagcgaattcc |
131 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
|
|
| T |
15942504 |
atttttggtccctgcaatatgagcgaattcc |
15942474 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 81; Significance: 1e-37; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 580 - 708
Target Start/End: Complemental strand, 247478 - 247350
Alignment:
| Q |
580 |
tttggggatagagggacttgaaccctcacgatttctaaagtcgacggattttcctcttactaaaaatttcattgatgtcggtattgacatgtagaatggg |
679 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
247478 |
tttggggatagagggacttgaaccctcacaacttaaaaagtcgacggattttccttttactagaaatttcattgttgtcagtattgacatgtagaatggg |
247379 |
T |
 |
| Q |
680 |
actctatctttattctcgtctgattaatc |
708 |
Q |
| |
|
||||| ||||| | |||||| |||||||| |
|
|
| T |
247378 |
actctctctttgtcctcgtccgattaatc |
247350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 247864 - 247796
Alignment:
| Q |
408 |
ggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccagctgagctatcccgacc |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
247864 |
ggaaccagatttgaactggtgacacgaggattttcagtcctctgctctaccaactgagctatcctgacc |
247796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 793 - 830
Target Start/End: Complemental strand, 247042 - 247005
Alignment:
| Q |
793 |
aactccatttgttagaacagcttccattgagtctctgc |
830 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
247042 |
aactcgattcgttagaacagcttccattgagtctctgc |
247005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University