View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_23 (Length: 461)
Name: NF11718_high_23
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 9151856 - 9152290
Alignment:
| Q |
16 |
aaaattgacttgaaagataaaatgcgaagaaagtaattgaatttaaagacagtgctttttaaagataaatttgttgaaaatgtaaagtactttgaattaa |
115 |
Q |
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| T |
9151856 |
aaaattgacttgaaagataaaatgcgaagaaagtaattgaatttaaagacagtgctttgtaaagataaatttgttgaaaatgtaaagtactttgaattaa |
9151955 |
T |
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| Q |
116 |
aaggacaagaaaacatccgtttatagctaggagtagttttcagaaattaagtatccgatcttttgttctttatgagaactcttatttttagagaaagaaa |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9151956 |
aatgacaagaaaacatccgtttatagctaggagtagttttcagaaattaagtatccgatcttttgttctttatgagaactcttatttttagagaaagaaa |
9152055 |
T |
|
| Q |
216 |
actaagtaactgtcaattcagtgacagtccacgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaat |
315 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9152056 |
actaagtaactgtcaattcactgacagtccacgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaat |
9152155 |
T |
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| Q |
316 |
ttgttctacgtcagctgatattccgtaaaatttaagtcttatattataacacgtgtttgaaagacccattttcatacaaacgtgtctccaaataaacgtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9152156 |
ttgttctacgtcagctgatattccgtaaaatttaagtcttatattataacacgtgtttgaaagatccattttcatacaaacgtgtctccaaataaacgtg |
9152255 |
T |
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| Q |
416 |
tcttgtaagtcatcttctccgtcgatatccaaatc |
450 |
Q |
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| T |
9152256 |
tcttgtaagtcatcttctccgtcgatatccaaatc |
9152290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 147 - 450
Target Start/End: Complemental strand, 9176627 - 9176324
Alignment:
| Q |
147 |
agtagttttcagaaattaagtatccgatcttttgttctttatgagaactcttatttttagagaaagaaaactaagtaactgtcaattcagtgacagtcca |
246 |
Q |
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| T |
9176627 |
agtagttttcagaaattaagtatccgatcttttgttctttatgagaactcttatttttagagaaagaaaactaagtaactgtcaattcagtgacagtcca |
9176528 |
T |
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| Q |
247 |
cgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaatttgttctacgtcagctgatattccgtaaaat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
9176527 |
cgatcatgacagttactttgttgagctagtctcaacagatcgtgtcgtaggttgacacacttccaaaatttgttctacatcagatgatattccgtaaaat |
9176428 |
T |
|
| Q |
347 |
ttaagtcttatattataacacgtgtttgaaagacccattttcatacaaacgtgtctccaaataaacgtgtcttgtaagtcatcttctccgtcgatatcca |
446 |
Q |
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| T |
9176427 |
ttaagtcttatattataacacgtgtttgaaagatccattttcatacaaacgtgtctccaaataaacgtgtcttgtaagtcatcttctccgtcgatatcca |
9176328 |
T |
|
| Q |
447 |
aatc |
450 |
Q |
| |
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|||| |
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| T |
9176327 |
aatc |
9176324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 9176672 - 9176624
Alignment:
| Q |
56 |
atttaaagacagtgctttttaaagataaatttgttgaaaatgtaaagta |
104 |
Q |
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| T |
9176672 |
atttaaagacagtgctttgtaaagataaatttgttgaaaatgtaaagta |
9176624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 36319084 - 36319156
Alignment:
| Q |
153 |
tttcagaaattaagtatccgatcttttgttctttatgagaactcttatttttagagaaagaaaactaagtaac |
225 |
Q |
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| T |
36319084 |
tttcagaaattaagtattcggtcatttcttctttgtgagaactcttatttatagagaaggtaaactaagtaac |
36319156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 24094533 - 24094439
Alignment:
| Q |
177 |
tttgttctttatgagaactcttatttttagagaaagaaaactaagtaactgtcaattcagtgacagtccacgatcatgacagttactttgttgag |
271 |
Q |
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||||||||| ||| |||| |||||| | ||||||| ||||||||||||||||| || ||| || | | || ||||||||||||||||||||||| |
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| T |
24094533 |
tttgttcttcgtgaaaacttttatttattgagaaaggaaactaagtaactgtcactttagtaactgactacaatcatgacagttactttgttgag |
24094439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 17898881 - 17898939
Alignment:
| Q |
172 |
gatcttttgttctttatgagaactcttatttttagagaaagaaaactaagtaactgtca |
230 |
Q |
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|||| |||||||||| ||||||||||||||| || |||||||||| |||||||| |||| |
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| T |
17898881 |
gatcatttgttctttgtgagaactcttatttataaagaaagaaaattaagtaaccgtca |
17898939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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