View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_29 (Length: 431)
Name: NF11718_high_29
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 29487497 - 29487112
Alignment:
| Q |
1 |
ttcgagccataacagttcgaccaaacatgaaagaatgatgcggataaacgtaaccaatcaaatgaaaccaaatcaaccaagatttgtgaaaatctagaca |
100 |
Q |
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| T |
29487497 |
ttcgagtcataacagttcgaccaaacatgaaagaatgacgcggataaacataaccaatcaaatgaaaccaaatcaaccaagatttgtgaaaatctagaca |
29487398 |
T |
|
| Q |
101 |
gaccgaccaaaatttgtatactaatagtgtagaaagttaattaatcttatttatgaaagtggcaatttaggaaaataactcatagtcattaacacgccaa |
200 |
Q |
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| T |
29487397 |
gaccgaccaaactttgtatactaatag-----aaagttaattaatcttatttatgaaagtggcaatttaggaaaataactcatagtcattaacacgccaa |
29487303 |
T |
|
| Q |
201 |
actctcaattggtatagcaccccatgtgtaagctttgattgcatgactcacaccaaggttgcagcacatgctcgcttatttgcagattatgtttttctta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
29487302 |
actctcaattggtatagcaccccatgtgtaagctttgattgcatgcctcacaccaaggttgcagcacatgctcgcttatttgctgatgatgtttttctta |
29487203 |
T |
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| Q |
301 |
atctattgttatttgaggacatataataaatgaacatattatccttcttattttaattccttgaccctctctataatactacctccattct |
391 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29487202 |
atatattgttatttgaggacatataataaatgaacatattatccttcttattttaattccttcaccctctctataatactacctccattct |
29487112 |
T |
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