View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_44 (Length: 345)
Name: NF11718_high_44
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 32523334 - 32523640
Alignment:
| Q |
12 |
gagatgaagttgtgtgtgtgaagtagatgaaaagaggggtgatgatagattttgtgaacccttgtgtatatatttaaacaacatcataatttttaatata |
111 |
Q |
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| T |
32523334 |
gagatgaagttgtgtgtgtgaagtagatgaaaagaggggtgaagatagattttgtg----cttgtatatatatttaaaca---tcataaattttaatata |
32523426 |
T |
|
| Q |
112 |
ttataaaacttgaatcttttcttccaatcacacaagtactatatatttaagnnnnnnnctatggtgttcgcacaactaatttgttacggttacaaatagc |
211 |
Q |
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| T |
32523427 |
ttttaaaacttgaatcttttcttccaatcacacaagtactatatatttaagaaaaaaactatggtgttcgcacaactaatttgttacggttacaaatagc |
32523526 |
T |
|
| Q |
212 |
tggtcttatctcccatgacattattatatatgctgttggcnnnnnnntgaatctaactgataaatttcacttttcctatgatcaacctttcccaattcac |
311 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
32523527 |
tggtcttatctcccatgacattat----tatgctgttggc-aaaaaatgaatctaactgataaatttcacttttcctatgatcaaccttt-tcagttcac |
32523620 |
T |
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| Q |
312 |
aaagtcacatcaagagaatg |
331 |
Q |
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| T |
32523621 |
aaagtcacatcaagagaatg |
32523640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 91 - 331
Target Start/End: Original strand, 32531810 - 32532044
Alignment:
| Q |
91 |
aacatcataatttttaatatattataaaacttgaatcttttcttccaatcacacaagtactatatatttaagnnnnnnnctatggtgttcgcacaactaa |
190 |
Q |
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| T |
32531810 |
aacatcctaatttttaatatactataaaacttcaatgtaatcttccaa-cacacaagtactatatatg-aagaaaaaag--atggtgttggcacaactaa |
32531905 |
T |
|
| Q |
191 |
tttgttacggttacaaatagctggtcttatctcccatgacattattatatatgctgttggcnnnnnnntgaatctaactgataaatttcacttttcctat |
290 |
Q |
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| T |
32531906 |
tttgttaca-ttacaaatagctgatcttatctcccatgacattattatatatgctgttggcaaaaaa-tgaatctaactgataaatttcgcttttcctat |
32532003 |
T |
|
| Q |
291 |
gatcaacctttcccaattcacaaagtcacatcaagagaatg |
331 |
Q |
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| T |
32532004 |
gatcaacctttcccagttcacaaagtcacatcaagagaatg |
32532044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 32527595 - 32527639
Alignment:
| Q |
14 |
gatgaagttgtgtgtgtgaagtagatgaaaagaggggtgatgata |
58 |
Q |
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| T |
32527595 |
gatgaagttgtgtgtgtgaagtagatgaaaagaggggcgatgata |
32527639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 32524075 - 32524036
Alignment:
| Q |
18 |
aagttgtgtgtgtgaagtagatgaaaagaggggtgatgat |
57 |
Q |
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| T |
32524075 |
aagttgtgtgtgtgaagtagatgaaaagaggggtaatgat |
32524036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 32527745 - 32527802
Alignment:
| Q |
102 |
ttttaatatattataaaacttgaatcttttcttcc--aatcacacaagtactatatat |
157 |
Q |
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|||||||||||||||||||||||| | |||||||| | |||||||||||||||||| |
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| T |
32527745 |
ttttaatatattataaaacttgaaccatttcttccagacacacacaagtactatatat |
32527802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 29274222 - 29274193
Alignment:
| Q |
264 |
ctaactgataaatttcacttttcctatgat |
293 |
Q |
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| T |
29274222 |
ctaactgataaatttcacttttcctatgat |
29274193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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