View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_46 (Length: 323)
Name: NF11718_high_46
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 27569606 - 27569302
Alignment:
| Q |
1 |
tattatagatgaggcaccttcccctcataggcaagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatg |
100 |
Q |
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| T |
27569606 |
tattatagatgaggcaccttcccctcataggcaagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatg |
27569507 |
T |
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| Q |
101 |
gtgcctgttaggatatccttatctaaagaattgaatggttactacttactgtgtaggctaaatgatgggatttactgagagaaaacgactgacgaaccac |
200 |
Q |
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| T |
27569506 |
gttcctgttaggatatccttatctaaagaattgaatggttactacttactgtgtaggctaaatgatgggatttactgagagaaaacgactgacgaaccac |
27569407 |
T |
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| Q |
201 |
cacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatggcccgctttgtagatgagtcacctacatatttattgctagaaa |
300 |
Q |
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| T |
27569406 |
cacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatggcccgctttgtagatgagtcacctacatatttattgctagaaa |
27569307 |
T |
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| Q |
301 |
cccac |
305 |
Q |
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||||| |
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| T |
27569306 |
cccac |
27569302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 27426412 - 27426527
Alignment:
| Q |
32 |
caagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggtgcctgttaggatatccttatctaaagaat |
131 |
Q |
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| T |
27426412 |
caagtgcacaataacaattc-agtaacaaggtcaattatttcactgaatgacacaggcctcattccatggtccctgttaggatatccttatttaaagagt |
27426510 |
T |
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| Q |
132 |
tgaatggttactactta |
148 |
Q |
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| T |
27426511 |
tgaatggttagtactta |
27426527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 27416294 - 27416379
Alignment:
| Q |
65 |
aattattccacttaatgacacattcctcattctatggtgcctgttaggatatccttatctaaagaattgaatggttactacttact |
150 |
Q |
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| T |
27416294 |
aattatttcactgaatgacataggcctcattatatggttcctgttaggatatccttatctaaagaattgaatggttagtacttact |
27416379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 27420821 - 27420906
Alignment:
| Q |
52 |
cagtaacaaagtcaattattccacttaatgacacattcctcattctatggtgcctgttaggatatccttatctaaagaattgaatg |
137 |
Q |
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| T |
27420821 |
cagtaacaaagtcaattgtttcactgaatgacataggctgcattctatggtgcctgttaggatatccttatctaaagaattgaatg |
27420906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 27420931 - 27420995
Alignment:
| Q |
195 |
aaccaccacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatggc |
259 |
Q |
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| T |
27420931 |
aaccaccacatggtgttgtcttatagattttcatcaagagacacaagagattttagaataatggc |
27420995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 27413281 - 27413417
Alignment:
| Q |
9 |
atgaggcaccttcccctcataggcaagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggtgcctgt |
108 |
Q |
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|||||||| ||||| ||||| ||||||| |||| |||||| ||||||||| ||||||||||| || ||| || |||||||||||||| ||||| |
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| T |
27413281 |
atgaggcagcttcctttcataagcaagtgaacaagaacaatgacagtaacaaggtcaattattctgct-aatataacgggcctcattctatggttcctgt |
27413379 |
T |
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| Q |
109 |
taggatatccttatctaaagaattgaatggttactact |
146 |
Q |
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|||||||||||||||| |||||||||||||||| |||| |
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| T |
27413380 |
taggatatccttatcttaagaattgaatggttattact |
27413417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 27565581 - 27565448
Alignment:
| Q |
162 |
atgatgggatttactgagagaaaacgactgacgaaccaccacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatggccc |
261 |
Q |
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|||||||| | || ||||||| ||| || || |||||||||||||| ||||||| |||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
27565581 |
atgatgggctgtagtgagagacaacagctcacaaaccaccacatggtgttgtcttatagattttca----gagccacaagatgttttagaataatggccc |
27565486 |
T |
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| Q |
262 |
gctttgtagatgagtcacctacatatttattgctagaa |
299 |
Q |
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|||| ||||||||||||| ||||||||| ||||||| |
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| T |
27565485 |
tctttatagatgagtcacccacatatttacagctagaa |
27565448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 27413443 - 27413510
Alignment:
| Q |
189 |
ctgacgaaccaccacatggttttgtcttgtagattttcatcaagagtcacaagagattttagaataatg |
257 |
Q |
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|||| |||||| |||||||| ||||||| |||||||||| ||| |||||||| |||||||||||||||| |
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| T |
27413443 |
ctgaagaaccatcacatggtgttgtcttatagattttca-caatagtcacaatagattttagaataatg |
27413510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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