View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11718_high_47 (Length: 320)
Name: NF11718_high_47
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11718_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 8285166 - 8284871
Alignment:
| Q |
16 |
caagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctc |
115 |
Q |
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| T |
8285166 |
caagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctc |
8285067 |
T |
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| Q |
116 |
ttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaaca |
215 |
Q |
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| T |
8285066 |
ttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaaca |
8284967 |
T |
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| Q |
216 |
ttctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtgatgtc |
311 |
Q |
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| T |
8284966 |
ttctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtc |
8284871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 34687250 - 34687150
Alignment:
| Q |
32 |
atcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttga |
131 |
Q |
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| T |
34687250 |
atcatcattacttgaagttgtcgtgacaccaaaattaaattgtgggtcttgttggtgcatgtgcatcatattcatcgcttcctcttgaatattctcttga |
34687151 |
T |
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| Q |
132 |
t |
132 |
Q |
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| T |
34687150 |
t |
34687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 34695176 - 34694979
Alignment:
| Q |
32 |
atcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttga |
131 |
Q |
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||||||||| ||||| | ||| | |||||||||||||||||||||||||| || | ||| || ||||||| || | ||||||||||| ||||||||| |
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| T |
34695176 |
atcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatatgaatcgactcctcttgaatattctcttga |
34695077 |
T |
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| Q |
132 |
tcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaa |
229 |
Q |
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| T |
34695076 |
tcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtagaggcagatcaacattttcttgaggtaa |
34694979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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