View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_high_5 (Length: 705)

Name: NF11718_high_5
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_high_5
NF11718_high_5
[»] chr8 (1 HSPs)
chr8 (18-679)||(30403357-30404017)


Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Original strand, 30403357 - 30404017
Alignment:
Q  18 agttgttctcctctaatgatattgggattctttaccttcaaaagaatgtcgcgtttaccttgttttattcttttcatatgtaataattttgttatttacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403357 agttgttctcctctaatgatattgggattctttaccttcaaaagaatgtcgcgtttaccttgttttattcttttcatatgtaataattttgttatttacg 30403456  T
Q  118 attcattcgaatgcaactctacctgcctcgagagtctttgtatgcatctaacctcttcaattatacacagggtatgcccactatgtcgggggaacatctg 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403457 attcattcgaatgcaactctacttgcctcgagagtctttgtatgcatctaacctcttcaattatacacagggtatgcccactatgtcgggggaacatctg 30403556  T
Q  218 catttctaactcacctccaactcagaaatttagtggttagtttgttgatcagcatctagtttgaaacacttgatcttttatgtgggggaatatcagaagt 317  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30403557 catttctaactcacctccaactcggaactttagtggttagtttgttgatccgcatctattttgaaacacttgatcttttatgtgggggaatatcagaagt 30403656  T
Q  318 tcaatcattttctattggtattttcattattgtaaatggttatttactccgattgcagaataaatatgaaaaatatagttggagaaagaaaagaatgtta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403657 tcaatcattttctattggtattttcattattgtaaatggttatttactccgattgcagaataaatatgaaaaatatagttggagaaagaaaagaatgtta 30403756  T
Q  418 aggaggaggttag-gagggttatcttttggttactttctttgaaggccatcacattgtttcccccaaaatataattttggcatattgcagatgattgtgc 516  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30403757 aggaggaggttagtgagggttatcttttggttactttctttgaaggccatcacattgtttcccccaaaatataattttggaatattgcagatgattgtgc 30403856  T
Q  517 ctgacaaaagggtgcttgtgcatgttgtatttctgatgttgatattctaacagacgtttaaatatattacgagttagacaaaaactctacaatttgtacg 616  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||  |    
T  30403857 ctgacaaaagggtgcttgtgcatgttgtatttcagatgttgatattctaacagatgtttaaatatattatgagttagacaaacactctacaatttgt--g 30403954  T
Q  617 ttataatcaatgtcttgttctttacaagtattctaggtgcatataactattttataaaaaata 679  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30403955 ttataatcaatgttttgttctttacaagaattctaggtgcatataactattttataaaaaata 30404017  T

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