View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11718_high_50 (Length: 304)

Name: NF11718_high_50
Description: NF11718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11718_high_50
NF11718_high_50
[»] chr6 (1 HSPs)
chr6 (1-294)||(14909508-14909801)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 14909801 - 14909508
Alignment:
Q  1 ttgctggtatgcatctcgctgtcaattgtggtctcaagaacatggtttttgagagtgcttgtgaaagtatcattaaaaagctcaaaagacagcatacaga 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  14909801 ttgctggtatgcatctcgctgtcaattgtggtctcaggaacatggtttttgagagtgattgtgaaagtatcgttaaaaagctcaaaagacagcatacaga 14909702  T
Q  101 agatagatcatatttaggatatatcttgaaggaaatctggatgaccagtgctctgtttgacacctgtacttatcattttactcctagaataggcaataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14909701 agatagatcatatttaggatatatcttgaaggaaatctggatgaccagtgctctgtttgacacctgtacttatcattttactcctagaataggcaataga 14909602  T
Q  201 gtggcccattgtctggcccaacttgctcatttagaacccaataaaatttggaaggataatgttccctcccaagcttactctttatacgcctatg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14909601 gtggcccattgtctggcccaacttgctcatttagaacccaataaagtttggaaggataatgttccctcccaagcttactctttatacgcctatg 14909508  T

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